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Started by upstream project "BIOFORMATS-test-repo" build number 24 originally caused by: Started by upstream project "Trigger" build number 27 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins469797421240928434.sh + '[' avi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3010_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:37:35,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:37:35,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:37:35,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:37:35,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:37:35,382 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:37:35,382 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:37:35,382 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:37:35,383 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:37:35,383 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 11:37:35,384 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 11:37:35,384 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 469 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-05 11:37:35,398] [main] java.version = 1.8.0_342 [testng] 11:37:35,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:37:35,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:37:35,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-05_11-37-35.log] [testng] 11:37:35,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-05 11:37:35,472] [main] testng.directory = /data [testng] [2024-04-05 11:37:35,472] [main] testng.configDirectory = /config [testng] [2024-04-05 11:37:35,490] [main] testng.multiplier = 1.0 [testng] [2024-04-05 11:37:35,490] [main] testng.in-memory = false [testng] [2024-04-05 11:37:35,490] [main] testng.allow-missing = false [testng] [2024-04-05 11:37:35,490] [main] user.language = en [testng] [2024-04-05 11:37:35,490] [main] user.country = ${user.country} [testng] [2024-04-05 11:37:35,490] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-05 11:37:36,465] [main] ---------------------------------------- [testng] [2024-04-05 11:37:36,465] [main] Total files: 40 [testng] [2024-04-05 11:37:36,466] [main] Scan time: 0.975 s (24 ms/file) [testng] [2024-04-05 11:37:36,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-05 11:41:25,210] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 11:41:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:41:25,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-05_11-41-25.log] [testng] 11:41:25,212 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4119d60b - End of configuration. [testng] [2024-04-05 11:41:25,267] [pool-1-thread-12] Initializing /data/kurt/40x_6um_2.avi: [testng] 11:41:25,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:41:25,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-05_11-41-25.log] [testng] 11:41:25,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c931509 - End of configuration. [testng] [2024-04-05 11:41:25,313] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 11:41:25,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:41:25,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-05_11-41-25.log] [testng] 11:41:25,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4315d7ec - End of configuration. [testng] [2024-04-05 11:41:25,341] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] 11:41:25,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:41:25,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-05_11-41-25.log] [testng] 11:41:25,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b838408 - End of configuration. [testng] [2024-04-05 11:41:25,411] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 11:41:25,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:41:25,411 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,412 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-05_11-41-25.log] [testng] 11:41:25,412 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5297dad9 - End of configuration. [testng] [2024-04-05 11:41:25,419] [pool-1-thread-8] Initializing /data/chris/APZ04_009.avi: [testng] 11:41:25,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:41:25,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:25,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-05_11-41-25.log] [testng] 11:41:25,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58d850cb - End of configuration. [testng] [2024-04-05 11:41:31,888] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] 11:41:31,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:41:31,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:31,890 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-05_11-41-31.log] [testng] 11:41:31,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cd8474d - End of configuration. [testng] [2024-04-05 11:41:32,291] [pool-1-thread-6] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 11:41:32,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:41:32,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:32,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-05_11-41-32.log] [testng] 11:41:32,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b755ab5 - End of configuration. [testng] [2024-04-05 11:41:32,328] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 11:41:32,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:41:32,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:32,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-05_11-41-32.log] [testng] 11:41:32,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68b3bd23 - End of configuration. [testng] [2024-04-05 11:41:32,424] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 11:41:32,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:41:32,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:32,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-05_11-41-32.log] [testng] 11:41:32,426 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d27e150 - End of configuration. [testng] [2024-04-05 11:41:32,443] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 11:41:32,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:41:32,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:32,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-05_11-41-32.log] [testng] 11:41:32,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c50ba0 - End of configuration. [testng] [2024-04-05 11:41:32,608] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 11:41:32,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:41:32,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:41:32,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-05_11-41-32.log] [testng] 11:41:32,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62fd6f1 - End of configuration. [testng] [2024-04-05 11:41:34,164] [pool-1-thread-9] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] [2024-04-05 11:41:34,172] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-04-05 11:41:34,480] [pool-1-thread-11] Initializing /data/william/worm.avi: [testng] [2024-04-05 11:41:34,490] [pool-1-thread-4] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] [2024-04-05 11:41:34,596] [pool-1-thread-9] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-04-05 11:41:34,827] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi: [testng] [2024-04-05 11:41:34,926] [pool-1-thread-1] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-04-05 11:41:35,094] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-04-05 11:41:35,340] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2024-04-05 11:41:35,810] [pool-1-thread-6] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2024-04-05 11:41:35,912] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-04-05 11:41:35,964] [pool-1-thread-11] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-04-05 11:41:36,158] [pool-1-thread-9] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-04-05 11:41:59,386] [pool-1-thread-12] Initializing /data/simon/24_bit_problem.avi: [testng] [2024-04-05 11:41:59,453] [pool-1-thread-5] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2024-04-05 11:41:59,489] [pool-1-thread-4] Initializing /data/kurt/40x_6um.avi: [testng] [2024-04-05 11:41:59,534] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2024-04-05 11:41:59,892] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-04-05 11:42:00,135] [pool-1-thread-2] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-04-05 11:42:00,246] [pool-1-thread-11] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2024-04-05 11:42:00,305] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2024-04-05 11:42:00,591] [pool-1-thread-3] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-04-05 11:42:02,537] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-04-05 11:42:02,598] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] [2024-04-05 11:42:02,647] [pool-1-thread-12] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-04-05 11:42:02,812] [pool-1-thread-1] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 41 seconds Finished: SUCCESS