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Started by upstream project "BIOFORMATS-test-repo" build number 196 originally caused by: Started by upstream project "Trigger" build number 220 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins7788278232213791421.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30987_merge_ci -v /test/idr/repos/curated/olympus-oir:/data -v /test/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:35,596 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:35,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:21:35,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:35,600 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:35,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:35,601 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:35,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:35,602 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:35,603 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:35,603 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:35,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:35,604 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:35,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:35,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:35,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:35,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:35,866 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:35,866 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:35,866 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:35,868 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:35,868 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:21:35,869 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:21:35,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-22 01:21:35,880] [main] java.version = 17.0.2 [testng] 01:21:35,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:35,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:35,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-22_01-21-35.log] [testng] 01:21:35,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-22 01:21:35,931] [main] testng.directory = /data [testng] [2024-09-22 01:21:35,931] [main] testng.configDirectory = /config [testng] [2024-09-22 01:21:35,941] [main] testng.multiplier = 1.0 [testng] [2024-09-22 01:21:35,942] [main] testng.in-memory = false [testng] [2024-09-22 01:21:35,942] [main] testng.allow-missing = false [testng] [2024-09-22 01:21:35,942] [main] user.language = en [testng] [2024-09-22 01:21:35,942] [main] user.country = ${user.country} [testng] [2024-09-22 01:21:35,942] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-22 01:21:52,925] [main] ---------------------------------------- [testng] [2024-09-22 01:21:52,925] [main] Total files: 283 [testng] [2024-09-22 01:21:52,925] [main] Scan time: 16.983 s (60 ms/file) [testng] [2024-09-22 01:21:52,925] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-22 01:29:47,039] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] 01:29:47,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:47,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-22_01-29-47.log] [testng] 01:29:47,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c08f1a - End of configuration. [testng] [2024-09-22 01:29:47,175] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 01:29:47,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:47,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-22_01-29-47.log] [testng] 01:29:47,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@785ea6b1 - End of configuration. [testng] [2024-09-22 01:29:47,265] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] 01:29:47,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:47,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,266 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-22_01-29-47.log] [testng] 01:29:47,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410c0ff0 - End of configuration. [testng] [2024-09-22 01:29:47,342] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] 01:29:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-22_01-29-47.log] [testng] 01:29:47,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f1eaa01 - End of configuration. [testng] [2024-09-22 01:29:47,406] [pool-1-thread-9] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] 01:29:47,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:47,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-22_01-29-47.log] [testng] 01:29:47,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4424c103 - End of configuration. [testng] [2024-09-22 01:29:47,575] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: [testng] 01:29:47,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:47,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,576 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-22_01-29-47.log] [testng] 01:29:47,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2a2757 - End of configuration. [testng] [2024-09-22 01:29:47,951] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] 01:29:47,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:47,951 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:47,952 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-22_01-29-47.log] [testng] 01:29:47,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50b2615e - End of configuration. [testng] [2024-09-22 01:29:48,059] [pool-1-thread-6] Initializing /data/qa-17335/1.oir: [testng] 01:29:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:48,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-22_01-29-48.log] [testng] 01:29:48,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@554c2d45 - End of configuration. [testng] [2024-09-22 01:29:48,129] [pool-1-thread-5] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] 01:29:48,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:48,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-22_01-29-48.log] [testng] 01:29:48,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ed48ef - End of configuration. [testng] [2024-09-22 01:29:48,177] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] 01:29:48,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:48,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-22_01-29-48.log] [testng] 01:29:48,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c2cdc5b - End of configuration. [testng] [2024-09-22 01:29:48,184] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] 01:29:48,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:48,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-22_01-29-48.log] [testng] 01:29:48,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32311b7c - End of configuration. [testng] [2024-09-22 01:29:48,226] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] 01:29:48,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:48,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,227 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-22_01-29-48.log] [testng] 01:29:48,228 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40c5d772 - End of configuration. [testng] [2024-09-22 01:29:49,788] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-09-22 01:29:50,687] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-09-22 01:29:50,846] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-09-22 01:29:50,893] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-09-22 01:29:50,978] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-09-22 01:29:51,086] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-09-22 01:29:51,276] [pool-1-thread-1] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-09-22 01:29:51,467] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-09-22 01:29:51,640] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-09-22 01:29:51,773] [pool-1-thread-9] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-09-22 01:29:52,736] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-09-22 01:29:52,831] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-09-22 01:29:53,029] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-09-22 01:29:53,178] [pool-1-thread-6] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-09-22 01:29:53,352] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-09-22 01:29:53,406] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-09-22 01:29:53,508] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-09-22 01:29:55,892] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-09-22 01:29:56,172] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-09-22 01:29:56,606] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-09-22 01:29:56,936] [pool-1-thread-8] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-09-22 01:29:57,192] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-09-22 01:29:57,411] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-09-22 01:29:57,469] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-09-22 01:29:57,576] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-09-22 01:29:57,788] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-09-22 01:29:57,864] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-09-22 01:29:58,149] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-09-22 01:29:58,285] [pool-1-thread-7] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-09-22 01:29:58,559] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-09-22 01:30:03,408] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-09-22 01:30:03,496] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-09-22 01:30:03,582] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-09-22 01:30:04,365] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-09-22 01:30:04,504] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-09-22 01:30:04,587] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-09-22 01:30:05,309] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-09-22 01:30:06,525] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-09-22 01:30:07,107] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-09-22 01:30:07,243] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-09-22 01:30:07,347] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10D1 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[testng] [2024-09-22 01:30:55,615] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-09-22 01:30:56,021] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-09-22 01:30:58,457] [pool-1-thread-1] Initializing /data/qa-17919/f10187.oir: [testng] [2024-09-22 01:31:14,427] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-09-22 01:31:14,652] [pool-1-thread-7] Initializing /data/qa-17270/image1.oir: [testng] [2024-09-22 01:31:14,868] [pool-1-thread-8] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-09-22 01:31:15,106] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-09-22 01:31:15,478] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-09-22 01:31:16,475] [pool-1-thread-12] Initializing 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[pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-09-22 01:31:20,677] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-09-22 01:31:20,758] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-09-22 01:31:21,524] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-09-22 01:31:22,092] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-09-22 01:32:03,483] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-09-22 01:32:04,203] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-09-22 01:32:06,876] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-09-22 01:32:07,138] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-09-22 01:32:07,434] [pool-1-thread-5] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-09-22 01:32:08,000] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-09-22 01:32:08,156] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-09-22 01:32:08,609] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-09-22 01:32:27,520] [pool-1-thread-5] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-09-22 01:32:28,182] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-09-22 01:32:28,657] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-09-22 01:32:30,467] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-09-22 01:32:31,121] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-09-22 01:32:31,173] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-09-22 01:32:31,894] [pool-1-thread-11] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-09-22 01:32:32,270] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-09-22 01:32:32,569] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-09-22 01:32:33,148] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-09-22 01:32:33,696] [pool-1-thread-7] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-09-22 01:32:33,939] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-09-22 01:32:34,757] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-09-22 01:32:34,995] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-09-22 01:32:35,473] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-09-22 01:32:35,812] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-09-22 01:32:36,532] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-09-22 01:32:36,662] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-09-22 01:32:36,709] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-09-22 01:32:37,439] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-09-22 01:32:37,536] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 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01:32:44,350] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir: [testng] [2024-09-22 01:32:45,600] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-09-22 01:32:45,989] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-09-22 01:32:46,451] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-09-22 01:32:46,518] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-09-22 01:32:47,155] [pool-1-thread-4] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-09-22 01:32:47,335] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-09-22 01:32:47,714] [pool-1-thread-9] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-09-22 01:32:47,777] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-09-22 01:32:48,478] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-09-22 01:32:48,733] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-09-22 01:32:48,977] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-09-22 01:32:49,042] [pool-1-thread-9] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-09-22 01:32:49,348] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-09-22 01:32:50,057] [pool-1-thread-4] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-09-22 01:32:50,317] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-09-22 01:32:50,610] [pool-1-thread-11] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-09-22 01:32:50,895] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-09-22 01:32:51,325] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-09-22 01:32:51,855] [pool-1-thread-11] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-09-22 01:32:51,894] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-09-22 01:32:52,176] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-09-22 01:32:52,468] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-09-22 01:32:52,708] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-09-22 01:32:53,309] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 minutes 14 seconds Finished: SUCCESS