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Started by upstream project "BIOFORMATS-test-repo" build number 196 originally caused by: Started by upstream project "Trigger" build number 220 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins11421314426489947543.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_30988_merge_ci -v /test/idr/repos/curated/tiff:/data -v /test/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:38,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:38,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:21:38,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:38,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:38,424 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:38,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:38,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:38,425 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:38,426 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:38,427 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:38,428 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:38,428 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:38,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:38,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:38,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:38,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:38,694 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:38,694 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:38,694 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:38,694 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:21:38,695 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:21:38,695 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-09-22 01:21:38,707] [main] java.version = 17.0.2 [testng] 01:21:38,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:38,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:38,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-09-22_01-21-38.log] [testng] 01:21:38,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-09-22 01:21:38,763] [main] testng.directory = /data [testng] [2024-09-22 01:21:38,763] [main] testng.configDirectory = /config [testng] [2024-09-22 01:21:38,775] [main] testng.multiplier = 1.0 [testng] [2024-09-22 01:21:38,776] [main] testng.in-memory = false [testng] [2024-09-22 01:21:38,776] [main] testng.allow-missing = false [testng] [2024-09-22 01:21:38,776] [main] user.language = en [testng] [2024-09-22 01:21:38,777] [main] user.country = ${user.country} [testng] [2024-09-22 01:21:38,777] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-09-22 01:21:46,708] [main] ---------------------------------------- [testng] [2024-09-22 01:21:46,709] [main] Total files: 4426 [testng] [2024-09-22 01:21:46,709] [main] Scan time: 7.931 s (1 ms/file) [testng] [2024-09-22 01:21:46,709] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-09-22 01:23:36,071] [pool-1-thread-1] Initializing /data/wayne/m51-16bit.tif: [testng] 01:23:36,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:36,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-09-22_01-23-36.log] [testng] 01:23:36,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437b9990 - End of configuration. [testng] [2024-09-22 01:23:36,098] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] 01:23:36,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:36,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-09-22_01-23-36.log] [testng] 01:23:36,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4916f1da - End of configuration. [testng] [2024-09-22 01:23:36,120] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z035.tif: [testng] 01:23:36,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:36,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-09-22_01-23-36.log] [testng] 01:23:36,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f5d089 - End of configuration. [testng] [2024-09-22 01:23:36,148] [pool-1-thread-10] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] 01:23:36,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:36,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-09-22_01-23-36.log] [testng] 01:23:36,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@411add5e - End of configuration. [testng] [2024-09-22 01:23:36,174] [pool-1-thread-9] Initializing /data/curtis/test3.tiff: [testng] 01:23:36,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:36,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-09-22_01-23-36.log] [testng] 01:23:36,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7fc29e - End of configuration. [testng] [2024-09-22 01:23:36,194] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] 01:23:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-09-22_01-23-36.log] [testng] 01:23:36,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38fa22d1 - End of configuration. [testng] [2024-09-22 01:23:36,219] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] 01:23:36,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:36,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-09-22_01-23-36.log] [testng] 01:23:36,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@326cf221 - End of configuration. [testng] [2024-09-22 01:23:36,240] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 01:23:36,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:36,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-09-22_01-23-36.log] [testng] 01:23:36,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@496ef46e - End of configuration. [testng] [2024-09-22 01:23:36,271] [pool-1-thread-5] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] 01:23:36,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:36,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-09-22_01-23-36.log] [testng] 01:23:36,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d16829c - End of configuration. [testng] [2024-09-22 01:23:36,314] [pool-1-thread-4] Initializing /data/josiah/cell-Z35.C0.tiff: [testng] 01:23:36,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:36,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-09-22_01-23-36.log] [testng] 01:23:36,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e8944f - End of configuration. [testng] [2024-09-22 01:23:36,340] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] 01:23:36,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:36,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-09-22_01-23-36.log] [testng] 01:23:36,341 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfbe8f3 - End of configuration. [testng] [2024-09-22 01:23:36,364] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] 01:23:36,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:36,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:36,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-09-22_01-23-36.log] [testng] 01:23:36,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd28492 - End of configuration. [testng] [2024-09-22 01:23:38,636] [pool-1-thread-2] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-09-22 01:23:38,684] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-09-22 01:23:38,702] [pool-1-thread-9] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-09-22 01:23:38,728] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-09-22 01:23:38,753] [pool-1-thread-6] Initializing /data/misc/9 h test.tif: [testng] [2024-09-22 01:23:38,775] [pool-1-thread-4] Initializing /data/public/cellprofiler/fruit-fly-cells/POS002.pattern/POS002.pattern: [testng] [2024-09-22 01:23:38,961] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs008.TIF: [testng] [2024-09-22 01:23:39,011] [pool-1-thread-3] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-09-22 01:23:39,043] [pool-1-thread-10] Initializing /data/curtis/map/brown-fox: [testng] [2024-09-22 01:23:39,071] [pool-1-thread-1] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Green.tif: [testng] [2024-09-22 01:23:39,120] [pool-1-thread-11] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-09-22 01:23:39,701] [pool-1-thread-7] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-09-22 01:23:39,756] [pool-1-thread-11] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-09-22 01:23:39,877] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-09-22 01:23:39,901] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-09-22 01:23:40,014] [pool-1-thread-12] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-09-22 01:23:40,100] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-09-22 01:23:40,128] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-09-22 01:23:40,266] [pool-1-thread-6] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-09-22 01:23:40,515] [pool-1-thread-8] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-09-22 01:23:40,563] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] [2024-09-22 01:23:40,593] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0252.TIF: [testng] [2024-09-22 01:23:40,638] [pool-1-thread-3] Initializing /data/josiah/cell-Z14.C0.tiff: [testng] [2024-09-22 01:23:40,678] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-09-22 01:23:40,701] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-09-22 01:23:40,721] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0205.TIF: [testng] [2024-09-22 01:23:40,978] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-32.tiff: [testng] [2024-09-22 01:23:41,144] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-09-22 01:23:41,292] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z033.tif: [testng] [2024-09-22 01:23:41,326] [pool-1-thread-1] Initializing /data/alexa/test4.tif: [testng] [2024-09-22 01:23:41,371] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-09-22 01:23:41,482] [pool-1-thread-3] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-09-22 01:23:41,565] [pool-1-thread-12] Initializing /data/martin/tester.tif: [testng] [2024-09-22 01:23:41,695] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-09-22 01:23:41,735] [pool-1-thread-2] Initializing /data/qa-4965/2012_10_31_GFPbiflinmKate_29hpf_20x_1.2_7_001.tif: [testng] [2024-09-22 01:23:41,790] [pool-1-thread-10] Initializing /data/public/condensation/A10.pattern2.tif: [testng] [2024-09-22 01:23:41,832] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-09-22 01:23:41,853] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-09-22 01:23:42,060] [pool-1-thread-6] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-09-22 01:23:42,154] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-09-22 01:23:42,180] [pool-1-thread-1] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-09-22 01:23:42,205] [pool-1-thread-11] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-09-22 01:23:42,403] [pool-1-thread-7] Initializing /data/boguslaw/ret_crop_64x64x64.tif: [testng] [2024-09-22 01:23:42,516] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP3.tiff: [testng] [2024-09-22 01:23:42,579] [pool-1-thread-10] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] 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01:25:06,749] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-09-22 01:25:06,791] [pool-1-thread-1] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-09-22 01:25:07,139] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z023.tif: [testng] [2024-09-22 01:25:07,256] [pool-1-thread-6] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-09-22 01:25:07,411] [pool-1-thread-1] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-09-22 01:25:07,667] [pool-1-thread-3] Initializing /data/misc/mri-stack.tif: [testng] [2024-09-22 01:25:07,760] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-09-22 01:25:07,843] [pool-1-thread-4] Initializing /data/julien/AVECCHRO.TIF: [testng] [2024-09-22 01:25:07,934] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-09-22 01:25:08,337] [pool-1-thread-12] Initializing 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Initializing /data/josh/jnb1s1_raw0245.TIF: [testng] [2024-09-22 01:25:36,163] [pool-1-thread-12] Initializing /data/misc/mri.eps: [testng] [2024-09-22 01:25:36,447] [pool-1-thread-12] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-09-22 01:25:36,475] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-09-22 01:25:36,846] [pool-1-thread-9] Initializing /data/public/condensation/C4.pattern4.tif: [testng] [2024-09-22 01:25:36,932] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z030.tif: [testng] [2024-09-22 01:25:36,955] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-09-22 01:25:37,088] [pool-1-thread-2] Initializing /data/public/condensation/C4.pattern1.tif: [testng] [2024-09-22 01:25:37,298] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-09-22 01:25:37,350] [pool-1-thread-4] Initializing 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[pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-09-22 01:25:48,605] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-09-22 01:25:48,666] [pool-1-thread-9] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-09-22 01:25:48,873] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs003.TIF: [testng] [2024-09-22 01:25:48,929] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-09-22 01:25:48,972] [pool-1-thread-9] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-09-22 01:25:49,239] [pool-1-thread-3] Initializing /data/jae/first image.tif: [testng] [2024-09-22 01:25:49,292] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0230.TIF: [testng] [2024-09-22 01:25:49,346] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2024-09-22 01:25:49,701] [pool-1-thread-3] Initializing 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01:25:50,878] [pool-1-thread-7] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2024-09-22 01:25:51,151] [pool-1-thread-3] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-09-22 01:25:51,391] [pool-1-thread-7] Initializing /data/josiah/cell-Z31.C1.tiff: [testng] [2024-09-22 01:25:51,446] [pool-1-thread-6] Initializing /data/damian/18m.tiff: [testng] [2024-09-22 01:25:51,669] [pool-1-thread-9] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-09-22 01:25:51,980] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x16.tiff: [testng] [2024-09-22 01:25:52,010] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-09-22 01:25:52,361] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] [2024-09-22 01:25:52,399] [pool-1-thread-2] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-09-22 01:25:52,472] 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[pool-1-thread-11] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-09-22 01:25:54,624] [pool-1-thread-2] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-09-22 01:25:54,851] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2024-09-22 01:25:55,188] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-09-22 01:25:55,248] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-09-22 01:25:55,855] [pool-1-thread-11] Initializing /data/josiah/cell-Z27.C0.tiff: [testng] [2024-09-22 01:25:56,242] [pool-1-thread-11] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-09-22 01:25:56,459] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-09-22 01:25:56,638] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-09-22 01:25:56,887] [pool-1-thread-2] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-09-22 01:25:57,173] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-09-22 01:25:57,285] [pool-1-thread-2] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-09-22 01:25:57,384] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-09-22 01:25:57,712] [pool-1-thread-11] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-09-22 01:25:57,786] [pool-1-thread-10] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-09-22 01:25:58,054] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-09-22 01:25:58,314] [pool-1-thread-12] Initializing /data/kevino/_BF_00003.tif: [testng] [2024-09-22 01:25:58,506] [pool-1-thread-10] Initializing /data/josiah/cell-Z20.C0.tiff: [testng] [2024-09-22 01:25:58,629] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-09-22 01:25:58,713] [pool-1-thread-9] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-09-22 01:25:59,463] [pool-1-thread-11] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-09-22 01:25:59,523] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-09-22 01:25:59,599] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z027.tif: [testng] [2024-09-22 01:25:59,713] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-09-22 01:25:59,770] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 31 seconds Finished: SUCCESS