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Started by upstream project "BIOFORMATS-test-repo" build number 209 originally caused by: Started by upstream project "Trigger" build number 235 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins283858161427877469.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33123_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:56,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:56,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:23:56,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:56,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:56,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:56,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:56,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:56,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:56,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:56,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:56,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:56,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:57,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:57,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:57,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:57,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:57,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:57,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:57,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:57,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:57,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:23:57,125 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:23:57,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-04 01:23:57,134] [main] java.version = 1.8.0_342 [testng] 01:23:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:57,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:57,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_01-23-57.log] [testng] 01:23:57,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-04 01:23:57,183] [main] testng.directory = /data [testng] [2024-10-04 01:23:57,183] [main] testng.configDirectory = /config [testng] [2024-10-04 01:23:57,195] [main] testng.multiplier = 1.0 [testng] [2024-10-04 01:23:57,195] [main] testng.in-memory = false [testng] [2024-10-04 01:23:57,195] [main] testng.allow-missing = false [testng] [2024-10-04 01:23:57,195] [main] user.language = en [testng] [2024-10-04 01:23:57,195] [main] user.country = ${user.country} [testng] [2024-10-04 01:23:57,195] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-04 01:23:57,737] [main] ---------------------------------------- [testng] [2024-10-04 01:23:57,737] [main] Total files: 21 [testng] [2024-10-04 01:23:57,738] [main] Scan time: 0.542 s (25 ms/file) [testng] [2024-10-04 01:23:57,738] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-04 01:24:01,769] [pool-1-thread-1] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:24:01,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:01,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:01,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_01-24-01.log] [testng] 01:24:01,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c2eb7db - End of configuration. [testng] [2024-10-04 01:24:01,962] [pool-1-thread-12] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:24:01,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:01,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:01,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_01-24-01.log] [testng] 01:24:01,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3974ad31 - End of configuration. [testng] [2024-10-04 01:24:02,235] [pool-1-thread-11] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:24:02,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:02,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:02,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_01-24-02.log] [testng] 01:24:02,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c2d503 - End of configuration. [testng] [2024-10-04 01:24:02,492] [pool-1-thread-10] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:24:02,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:02,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:02,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_01-24-02.log] [testng] 01:24:02,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c7e94db - End of configuration. [testng] [2024-10-04 01:24:02,740] [pool-1-thread-9] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:24:02,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:02,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:02,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_01-24-02.log] [testng] 01:24:02,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1663b109 - End of configuration. [testng] [2024-10-04 01:24:03,027] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim: [testng] 01:24:03,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:03,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:03,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_01-24-03.log] [testng] 01:24:03,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43221352 - End of configuration. [testng] [2024-10-04 01:24:03,280] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] 01:24:03,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:03,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:03,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_01-24-03.log] [testng] 01:24:03,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3db96b21 - End of configuration. [testng] [2024-10-04 01:24:03,582] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:24:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:03,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:03,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_01-24-03.log] [testng] 01:24:03,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f89d05b - End of configuration. [testng] [2024-10-04 01:24:03,844] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim: [testng] 01:24:03,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:03,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:03,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_01-24-03.log] [testng] 01:24:03,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67eddd8c - End of configuration. [testng] [2024-10-04 01:24:04,180] [pool-1-thread-4] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:24:04,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:04,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:04,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_01-24-04.log] [testng] 01:24:04,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@500123d1 - End of configuration. [testng] [2024-10-04 01:24:04,536] [pool-1-thread-3] Initializing /data/venu/Kontrolle0002.lim: [testng] 01:24:04,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:04,537 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:04,537 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_01-24-04.log] [testng] 01:24:04,538 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3760bcfb - End of configuration. [testng] [2024-10-04 01:24:04,741] [pool-1-thread-2] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:24:04,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:04,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:04,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_01-24-04.log] [testng] 01:24:04,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@795e76ca - End of configuration. [testng] [2024-10-04 01:24:09,582] [pool-1-thread-10] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-10-04 01:24:09,798] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-10-04 01:24:10,119] [pool-1-thread-11] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-10-04 01:24:10,443] [pool-1-thread-9] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-10-04 01:24:10,725] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-10-04 01:24:10,978] [pool-1-thread-1] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-10-04 01:24:11,128] [pool-1-thread-8] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-10-04 01:24:11,285] [pool-1-thread-12] Initializing /data/venu/Kontrolle0001.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS