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Started by upstream project "BIOFORMATS-test-repo" build number 209 originally caused by: Started by upstream project "Trigger" build number 235 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins515843531986983252.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33124_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:24:17,160 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:24:17,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:24:17,162 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:17,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:24:17,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:24:17,163 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:24:17,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:24:17,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:17,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:24:17,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:24:17,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:24:17,164 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:24:17,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:17,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:17,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:17,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:17,456 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:17,457 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:17,457 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:17,457 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:17,457 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:24:17,458 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:24:17,458 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-04 01:24:17,469] [main] java.version = 1.8.0_342 [testng] 01:24:17,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:17,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:17,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-04_01-24-17.log] [testng] 01:24:17,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-10-04 01:24:17,524] [main] testng.directory = /data [testng] [2024-10-04 01:24:17,524] [main] testng.configDirectory = /config [testng] [2024-10-04 01:24:17,541] [main] testng.multiplier = 1.0 [testng] [2024-10-04 01:24:17,541] [main] testng.in-memory = false [testng] [2024-10-04 01:24:17,541] [main] testng.allow-missing = false [testng] [2024-10-04 01:24:17,541] [main] user.language = en [testng] [2024-10-04 01:24:17,541] [main] user.country = ${user.country} [testng] [2024-10-04 01:24:17,542] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-04 01:24:33,815] [main] ---------------------------------------- [testng] [2024-10-04 01:24:33,815] [main] Total files: 21 [testng] [2024-10-04 01:24:33,816] [main] Scan time: 16.273 s (774 ms/file) [testng] [2024-10-04 01:24:33,816] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-04 01:24:58,371] [pool-1-thread-1] Initializing /data/stefan/001_q16.txt: [testng] 01:24:58,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:58,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:58,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-04_01-24-58.log] [testng] 01:24:58,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d299dfa - End of configuration. [testng] [2024-10-04 01:24:59,130] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 01:24:59,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:59,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:59,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-04_01-24-59.log] [testng] 01:24:59,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dbe8a91 - End of configuration. [testng] [2024-10-04 01:24:59,867] [pool-1-thread-11] Initializing /data/stefan/001_q12.txt: [testng] 01:24:59,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:59,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:59,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-04_01-24-59.log] [testng] 01:24:59,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eefb97d - End of configuration. [testng] [2024-10-04 01:25:01,308] [pool-1-thread-10] Initializing /data/stefan/001_q05.txt: [testng] 01:25:01,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:01,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:01,309 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-04_01-25-01.log] [testng] 01:25:01,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6652759a - End of configuration. [testng] [2024-10-04 01:25:02,058] [pool-1-thread-9] Initializing /data/stefan/001_q10.txt: [testng] 01:25:02,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:02,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:02,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-04_01-25-02.log] [testng] 01:25:02,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42b1cf19 - End of configuration. [testng] [2024-10-04 01:25:04,574] [pool-1-thread-8] Initializing /data/stefan/001_q07.txt: [testng] 01:25:04,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:04,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:04,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-04_01-25-04.log] [testng] 01:25:04,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@539c6b66 - End of configuration. [testng] [2024-10-04 01:25:06,397] [pool-1-thread-7] Initializing /data/stefan/001_q02.txt: [testng] 01:25:06,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:06,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:06,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-04_01-25-06.log] [testng] 01:25:06,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dd73332 - End of configuration. [testng] [2024-10-04 01:25:07,730] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 01:25:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:07,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:07,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-04_01-25-07.log] [testng] 01:25:07,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22ea0a5 - End of configuration. [testng] [2024-10-04 01:25:09,771] [pool-1-thread-5] Initializing /data/stefan/001_q01.txt: [testng] 01:25:09,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:09,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:09,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-04_01-25-09.log] [testng] 01:25:09,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262fc611 - End of configuration. [testng] [2024-10-04 01:25:10,683] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 01:25:10,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:10,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:10,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-04_01-25-10.log] [testng] 01:25:10,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46180177 - End of configuration. [testng] [2024-10-04 01:25:12,568] [pool-1-thread-3] Initializing /data/stefan/001_q18.txt: [testng] 01:25:12,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:12,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:12,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-04_01-25-12.log] [testng] 01:25:12,569 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61488ddc - End of configuration. [testng] [2024-10-04 01:25:13,324] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt: [testng] 01:25:13,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:13,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:13,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-04_01-25-13.log] [testng] 01:25:13,325 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799d48b5 - End of configuration. [testng] [2024-10-04 01:25:29,178] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] [2024-10-04 01:25:30,209] [pool-1-thread-5] Initializing /data/stefan/001_q06.txt: [testng] [2024-10-04 01:25:31,602] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] [2024-10-04 01:25:32,430] [pool-1-thread-10] Initializing /data/stefan/001_q09.txt: [testng] [2024-10-04 01:25:33,838] [pool-1-thread-12] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-04 01:25:35,359] [pool-1-thread-6] Initializing /data/stefan/001_q13.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 38 seconds Finished: SUCCESS