Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 211
originally caused by:
 Started by upstream project "Trigger" build number 237
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins13608089619079700929.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_33447_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:20:49,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:20:49,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:20:49,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:49,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:20:49,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:20:49,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:20:49,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:20:49,911 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:49,912 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:20:49,912 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:20:49,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:20:49,913 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:20:50,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:20:50,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:20:50,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:20:50,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:20:50,127 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:20:50,127 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:20:50,127 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:20:50,128 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:20:50,128 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:20:50,129 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:20:50,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-06 01:20:50,139] [main] java.version = 17.0.2
   [testng] 01:20:50,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:20:50,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:20:50,193 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_01-20-50.log]
   [testng] 01:20:50,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-10-06 01:20:50,197] [main] testng.directory = /data
   [testng] [2024-10-06 01:20:50,197] [main] testng.configDirectory = /config
   [testng] [2024-10-06 01:20:50,206] [main] testng.multiplier = 1.0
   [testng] [2024-10-06 01:20:50,207] [main] testng.in-memory = false
   [testng] [2024-10-06 01:20:50,207] [main] testng.allow-missing = false
   [testng] [2024-10-06 01:20:50,207] [main] user.language = en
   [testng] [2024-10-06 01:20:50,207] [main] user.country = ${user.country}
   [testng] [2024-10-06 01:20:50,207] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-06 01:21:11,430] [main] ----------------------------------------
   [testng] [2024-10-06 01:21:11,431] [main] Total files: 315
   [testng] [2024-10-06 01:21:11,431] [main] Scan time: 21.222 s (67 ms/file)
   [testng] [2024-10-06 01:21:11,431] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 192 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-06 01:29:47,485] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: 
   [testng] 01:29:47,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:29:47,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:47,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_01-29-47.log]
   [testng] 01:29:47,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67dbc946 - End of configuration.
   [testng] [2024-10-06 01:29:47,977] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: 
   [testng] 01:29:47,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:29:47,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:47,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_01-29-47.log]
   [testng] 01:29:47,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55479d70 - End of configuration.
   [testng] [2024-10-06 01:29:48,250] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] 01:29:48,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:29:48,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:48,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_01-29-48.log]
   [testng] 01:29:48,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@363b93d - End of configuration.
   [testng] [2024-10-06 01:29:48,801] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: 
   [testng] 01:29:48,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:29:48,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:48,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_01-29-48.log]
   [testng] 01:29:48,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db63935 - End of configuration.
   [testng] [2024-10-06 01:29:49,236] [pool-1-thread-9] Initializing /data/qa-17335/OSR-Z.ome.tif: 
   [testng] 01:29:49,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:29:49,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:49,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_01-29-49.log]
   [testng] 01:29:49,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff05873 - End of configuration.
   [testng] [2024-10-06 01:29:49,506] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: 
   [testng] 01:29:49,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:29:49,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:49,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_01-29-49.log]
   [testng] 01:29:49,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ef81f7 - End of configuration.
   [testng] [2024-10-06 01:29:49,922] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: 
   [testng] 01:29:49,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:29:49,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:49,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_01-29-49.log]
   [testng] 01:29:49,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dca2a0 - End of configuration.
   [testng] [2024-10-06 01:29:50,278] [pool-1-thread-6] Initializing /data/qa-17335/1.oir: 
   [testng] 01:29:50,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:29:50,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:50,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_01-29-50.log]
   [testng] 01:29:50,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@283d4513 - End of configuration.
   [testng] [2024-10-06 01:29:50,489] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: 
   [testng] 01:29:50,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:29:50,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:50,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_01-29-50.log]
   [testng] 01:29:50,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c02bc4 - End of configuration.
   [testng] [2024-10-06 01:29:50,729] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: 
   [testng] 01:29:50,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:29:50,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:50,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_01-29-50.log]
   [testng] 01:29:50,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@627dde3e - End of configuration.
   [testng] [2024-10-06 01:29:51,001] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: 
   [testng] 01:29:51,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:29:51,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:51,002 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_01-29-51.log]
   [testng] 01:29:51,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e06a699 - End of configuration.
   [testng] [2024-10-06 01:29:51,354] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir: 
   [testng] 01:29:51,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:29:51,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:29:51,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_01-29-51.log]
   [testng] 01:29:51,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edacfa8 - End of configuration.
   [testng] [2024-10-06 01:29:57,666] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: 
   [testng] [2024-10-06 01:29:58,352] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: 
   [testng] [2024-10-06 01:29:58,748] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: 
   [testng] [2024-10-06 01:29:59,532] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif: 
   [testng] [2024-10-06 01:30:00,117] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: 
   [testng] [2024-10-06 01:30:00,600] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: 
   [testng] [2024-10-06 01:30:01,394] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: 
   [testng] [2024-10-06 01:30:01,664] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: 
   [testng] [2024-10-06 01:30:01,993] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: 
   [testng] [2024-10-06 01:30:06,286] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: 
   [testng] [2024-10-06 01:30:06,913] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: 
   [testng] [2024-10-06 01:30:07,661] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: 
   [testng] [2024-10-06 01:30:08,178] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: 
   [testng] [2024-10-06 01:30:08,736] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: 
   [testng] [2024-10-06 01:30:09,414] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif: 
   [testng] [2024-10-06 01:30:09,910] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi: 
   [testng] [2024-10-06 01:30:10,111] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: 
   [testng] [2024-10-06 01:30:10,533] [pool-1-thread-10] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: 
   [testng] [2024-10-06 01:30:11,953] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: 
   [testng] [2024-10-06 01:30:12,379] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: 
   [testng] [2024-10-06 01:30:14,633] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.ome.tif: 
   [testng] [2024-10-06 01:30:15,283] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: 
   [testng] [2024-10-06 01:30:16,155] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: 
   [testng] [2024-10-06 01:30:16,608] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: 
   [testng] [2024-10-06 01:30:17,206] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir: 
   [testng] [2024-10-06 01:30:17,750] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: 
   [testng] [2024-10-06 01:30:18,517] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: 
   [testng] [2024-10-06 01:30:23,619] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: 
   [testng] [2024-10-06 01:30:27,111] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: 
   [testng] [2024-10-06 01:30:28,684] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: 
   [testng] [2024-10-06 01:30:29,165] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir: 
   [testng] [2024-10-06 01:30:30,008] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-venus stack.tif: 
   [testng] [2024-10-06 01:30:30,620] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: 
   [testng] [2024-10-06 01:30:31,139] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.ome.tif: 
   [testng] [2024-10-06 01:30:31,494] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: 
   [testng] [2024-10-06 01:30:31,762] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: 
   [testng] [2024-10-06 01:30:32,184] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: 
   [testng] [2024-10-06 01:30:32,488] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: 
   [testng] [2024-10-06 01:30:34,802] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif: 
   [testng] [2024-10-06 01:30:36,057] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: 
   [testng] [2024-10-06 01:30:37,462] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/Clipboard.tif: 
   [testng] [2024-10-06 01:30:38,496] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir: 
   [testng] [2024-10-06 01:30:38,993] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: 
   [testng] [2024-10-06 01:30:39,714] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: 
   [testng] [2024-10-06 01:30:40,202] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: 
   [testng] [2024-10-06 01:30:40,626] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: 
   [testng] [2024-10-06 01:30:41,013] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: 
   [testng] [2024-10-06 01:30:43,030] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif: 
   [testng] [2024-10-06 01:30:44,196] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg: 
   [testng] [2024-10-06 01:30:44,339] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: 
   [testng] [2024-10-06 01:30:45,148] [pool-1-thread-5] Initializing /data/olympus/XYZt.oir: 
   [testng] [2024-10-06 01:30:47,142] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: 
   [testng] [2024-10-06 01:30:48,083] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir: 
   [testng] [2024-10-06 01:30:48,660] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: 
   [testng] [2024-10-06 01:30:50,556] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: 
   [testng] [2024-10-06 01:30:53,504] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: 
   [testng] [2024-10-06 01:30:54,578] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: 
   [testng] [2024-10-06 01:30:55,270] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: 
   [testng] [2024-10-06 01:30:55,691] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: 
   [testng] [2024-10-06 01:30:56,275] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: 
   [testng] [2024-10-06 01:30:56,683] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: 
   [testng] [2024-10-06 01:30:57,245] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir: 
   [testng] [2024-10-06 01:31:25,472] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: 
   [testng] [2024-10-06 01:31:26,045] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: 
   [testng] [2024-10-06 01:31:27,389] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif: 
   [testng] [2024-10-06 01:31:28,734] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: 
   [testng] [2024-10-06 01:31:29,201] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001.oir: 
   [testng] [2024-10-06 01:31:29,806] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: 
   [testng] [2024-10-06 01:31:33,216] [pool-1-thread-7] Initializing /data/qa-17270/image1.oir: 
   [testng] [2024-10-06 01:31:33,451] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: 
   [testng] [2024-10-06 01:31:33,788] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: 
   [testng] [2024-10-06 01:31:34,224] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: 
   [testng] [2024-10-06 01:31:34,569] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-10-06 01:31:34,943] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: 
   [testng] [2024-10-06 01:31:37,040] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-alexa488.tif: 
   [testng] [2024-10-06 01:31:38,452] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: 
   [testng] [2024-10-06 01:31:40,130] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: 
   [testng] [2024-10-06 01:31:40,521] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.oir: 
   [testng] [2024-10-06 01:31:41,069] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: 
   [testng] [2024-10-06 01:31:42,309] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: 
   [testng] [2024-10-06 01:31:42,586] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-stack1.tif: 
   [testng] [2024-10-06 01:31:44,833] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: 
   [testng] [2024-10-06 01:31:47,606] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif: 
   [testng] [2024-10-06 01:31:49,920] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: 
   [testng] [2024-10-06 01:31:54,909] [pool-1-thread-1] Initializing /data/qa-16871/Clipboard.tif: 
   [testng] [2024-10-06 01:31:56,025] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: 
   [testng] [2024-10-06 01:31:56,495] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: 
   [testng] [2024-10-06 01:31:56,847] [pool-1-thread-8] Initializing /data/qa-17270/stack1.oir: 
   [testng] [2024-10-06 01:31:58,494] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: 
   [testng] [2024-10-06 01:31:59,223] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir: 
   [testng] [2024-10-06 01:32:20,043] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: 
   [testng] [2024-10-06 01:32:20,407] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: 
   [testng] [2024-10-06 01:32:21,092] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: 
   [testng] [2024-10-06 01:32:21,691] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: 
   [testng] [2024-10-06 01:32:22,140] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: 
   [testng] [2024-10-06 01:32:23,992] [pool-1-thread-1] Initializing /data/qa-17335/1.ome.tif: 
   [testng] [2024-10-06 01:32:25,042] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: 
   [testng] [2024-10-06 01:32:26,982] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.oir: 
   [testng] [2024-10-06 01:32:28,906] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: 
   [testng] [2024-10-06 01:32:29,377] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: 
   [testng] [2024-10-06 01:32:31,070] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: 
   [testng] [2024-10-06 01:32:32,444] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: 
   [testng] [2024-10-06 01:32:33,391] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: 
   [testng] [2024-10-06 01:32:33,826] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: 
   [testng] [2024-10-06 01:32:34,991] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: 
   [testng] [2024-10-06 01:32:35,753] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: 
   [testng] [2024-10-06 01:32:36,002] [pool-1-thread-2] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: 
   [testng] [2024-10-06 01:32:38,035] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir: 
   [testng] [2024-10-06 01:32:40,664] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.ome.tif: 
   [testng] [2024-10-06 01:32:40,979] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: 
   [testng] [2024-10-06 01:32:41,813] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: 
   [testng] [2024-10-06 01:32:44,446] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: 
   [testng] [2024-10-06 01:32:45,041] [pool-1-thread-4] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: 
   [testng] [2024-10-06 01:32:45,754] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: 
   [testng] [2024-10-06 01:32:48,083] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: 
   [testng] [2024-10-06 01:32:48,869] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: 
   [testng] [2024-10-06 01:32:49,398] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: 
   [testng] [2024-10-06 01:32:50,332] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: 
   [testng] [2024-10-06 01:32:53,586] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: 
   [testng] [2024-10-06 01:33:02,963] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: 
   [testng] [2024-10-06 01:33:03,377] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: 
   [testng] [2024-10-06 01:33:06,953] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: 
   [testng] [2024-10-06 01:33:09,135] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: 
   [testng] [2024-10-06 01:33:11,022] [pool-1-thread-7] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: 
   [testng] [2024-10-06 01:33:15,884] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: 
   [testng] [2024-10-06 01:33:16,286] [pool-1-thread-12] Initializing /data/qa-17331/60x zstack RS.oir: 
   [testng] [2024-10-06 01:33:18,802] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.oir: 
   [testng] [2024-10-06 01:33:19,669] [pool-1-thread-12] Initializing /data/olympus/spectral_scan_XYL.oir: 
   [testng] [2024-10-06 01:33:21,486] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: 
   [testng] [2024-10-06 01:33:21,988] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.oir: 
   [testng] [2024-10-06 01:33:24,480] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: 
   [testng] [2024-10-06 01:33:25,954] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-10-06 01:33:26,896] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: 
   [testng] [2024-10-06 01:33:28,048] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: 
   [testng] [2024-10-06 01:33:28,562] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.oir: 
   [testng] [2024-10-06 01:33:30,292] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: 
   [testng] [2024-10-06 01:33:30,768] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: 
   [testng] [2024-10-06 01:33:32,543] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: 
   [testng] [2024-10-06 01:33:34,132] [pool-1-thread-12] Initializing /data/qa-17270/image1.ome.tif: 
   [testng] [2024-10-06 01:33:34,511] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: 
   [testng] [2024-10-06 01:33:36,393] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: 
   [testng] [2024-10-06 01:33:37,574] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: 
   [testng] [2024-10-06 01:33:38,472] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.vsi: 
   [testng] [2024-10-06 01:33:38,657] [pool-1-thread-12] Initializing /data/olympus/XYZt.ome.tif: 
   [testng] [2024-10-06 01:33:39,111] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: 
   [testng] [2024-10-06 01:33:40,631] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: 
   [testng] [2024-10-06 01:33:41,771] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: 
   [testng] [2024-10-06 01:34:32,934] [pool-1-thread-4] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: 
   [testng] [2024-10-06 01:34:33,488] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: 
   [testng] [2024-10-06 01:34:34,955] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: 
   [testng] [2024-10-06 01:34:35,876] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: 
   [testng] [2024-10-06 01:34:37,140] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: 
   [testng] [2024-10-06 01:34:38,106] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: 
   [testng] [2024-10-06 01:34:39,496] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: 
   [testng] [2024-10-06 01:34:40,061] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: 
   [testng] [2024-10-06 01:34:43,189] [pool-1-thread-1] Initializing /data/qa-17922/example_multipart.oir: 
   [testng] [2024-10-06 01:35:06,031] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: 
   [testng] [2024-10-06 01:35:06,537] [pool-1-thread-7] Initializing /data/qa-17331/Clipboard.tif: 
   [testng] [2024-10-06 01:35:07,740] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: 
   [testng] [2024-10-06 01:35:10,018] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir: 
   [testng] [2024-10-06 01:35:10,797] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: 
   [testng] [2024-10-06 01:35:11,519] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: 
   [testng] [2024-10-06 01:35:13,390] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: 
   [testng] [2024-10-06 01:35:14,123] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: 
   [testng] [2024-10-06 01:35:16,195] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: 
   [testng] [2024-10-06 01:35:16,755] [pool-1-thread-12] Initializing /data/qa-17293/Clipboard.tif: 
   [testng] [2024-10-06 01:35:17,909] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: 
   [testng] [2024-10-06 01:35:20,745] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif: 
   [testng] [2024-10-06 01:35:21,453] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: 
   [testng] [2024-10-06 01:35:22,628] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: 
   [testng] [2024-10-06 01:35:24,061] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: 
   [testng] [2024-10-06 01:35:28,102] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: 
   [testng] [2024-10-06 01:35:28,423] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: 
   [testng] [2024-10-06 01:35:29,776] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: 
   [testng] [2024-10-06 01:35:32,192] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.oir: 
   [testng] [2024-10-06 01:35:33,279] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: 
   [testng] [2024-10-06 01:35:36,739] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.oir: 
   [testng] [2024-10-06 01:35:37,320] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.oir: 
   [testng] [2024-10-06 01:35:39,014] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: 
   [testng] [2024-10-06 01:35:40,855] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-1.tif: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 10176, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 50 minutes 24 seconds
Finished: SUCCESS