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Started by upstream project "BIOFORMATS-test-repo" build number 211 originally caused by: Started by upstream project "Trigger" build number 237 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins313277528262310934.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33448_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:53,237 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:53,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:53,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:53,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:53,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:53,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:53,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:53,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:53,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:53,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:53,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:53,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:53,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:53,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:53,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:53,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:53,442 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:53,442 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:53,442 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:53,442 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:53,442 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:20:53,443 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:20:53,443 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-06 01:20:53,453] [main] java.version = 17.0.2 [testng] 01:20:53,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:53,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:53,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-06_01-20-53.log] [testng] 01:20:53,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-10-06 01:20:53,503] [main] testng.directory = /data [testng] [2024-10-06 01:20:53,503] [main] testng.configDirectory = /config [testng] [2024-10-06 01:20:53,512] [main] testng.multiplier = 1.0 [testng] [2024-10-06 01:20:53,513] [main] testng.in-memory = false [testng] [2024-10-06 01:20:53,513] [main] testng.allow-missing = false [testng] [2024-10-06 01:20:53,513] [main] user.language = en [testng] [2024-10-06 01:20:53,513] [main] user.country = ${user.country} [testng] [2024-10-06 01:20:53,513] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-06 01:21:25,912] [main] ---------------------------------------- [testng] [2024-10-06 01:21:25,913] [main] Total files: 4426 [testng] [2024-10-06 01:21:25,913] [main] Scan time: 32.399 s (7 ms/file) [testng] [2024-10-06 01:21:25,913] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-06 01:29:22,258] [pool-1-thread-1] Initializing /data/wayne/m51-16bit.tif: [testng] 01:29:22,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:22,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-06_01-29-22.log] [testng] 01:29:22,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100d8fe9 - End of configuration. [testng] [2024-10-06 01:29:22,399] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] 01:29:22,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:22,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-06_01-29-22.log] [testng] 01:29:22,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d9c939 - End of configuration. [testng] [2024-10-06 01:29:22,524] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z035.tif: [testng] 01:29:22,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:22,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-06_01-29-22.log] [testng] 01:29:22,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c16187b - End of configuration. [testng] [2024-10-06 01:29:22,652] [pool-1-thread-10] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] 01:29:22,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:22,652 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,653 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-06_01-29-22.log] [testng] 01:29:22,653 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c4ec6e - End of configuration. [testng] [2024-10-06 01:29:22,761] [pool-1-thread-9] Initializing /data/curtis/test3.tiff: [testng] 01:29:22,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:22,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,762 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-06_01-29-22.log] [testng] 01:29:22,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566f7fdc - End of configuration. [testng] [2024-10-06 01:29:22,897] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] 01:29:22,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:22,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:22,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-06_01-29-22.log] [testng] 01:29:22,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5de2dbbe - End of configuration. [testng] [2024-10-06 01:29:23,051] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] 01:29:23,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:23,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-06_01-29-23.log] [testng] 01:29:23,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e31d077 - End of configuration. [testng] [2024-10-06 01:29:23,152] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] 01:29:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:23,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-06_01-29-23.log] [testng] 01:29:23,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e056100 - End of configuration. [testng] [2024-10-06 01:29:23,256] [pool-1-thread-5] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] 01:29:23,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:23,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-06_01-29-23.log] [testng] 01:29:23,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f42fdc - End of configuration. [testng] [2024-10-06 01:29:23,380] [pool-1-thread-4] Initializing /data/josiah/cell-Z35.C0.tiff: [testng] 01:29:23,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:23,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-06_01-29-23.log] [testng] 01:29:23,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fddc3f - End of configuration. [testng] [2024-10-06 01:29:23,476] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] 01:29:23,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:23,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-06_01-29-23.log] [testng] 01:29:23,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d3ea682 - End of configuration. [testng] [2024-10-06 01:29:23,574] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] 01:29:23,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:23,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:23,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-06_01-29-23.log] [testng] 01:29:23,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dea92f7 - End of configuration. [testng] [2024-10-06 01:29:27,901] [pool-1-thread-7] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-10-06 01:29:28,022] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-10-06 01:29:28,118] [pool-1-thread-12] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-10-06 01:29:28,328] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-10-06 01:29:28,421] [pool-1-thread-10] Initializing /data/misc/9 h test.tif: [testng] [2024-10-06 01:29:28,470] [pool-1-thread-6] Initializing /data/public/cellprofiler/fruit-fly-cells/POS002.pattern/POS002.pattern: [testng] [2024-10-06 01:29:28,938] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs008.TIF: [testng] [2024-10-06 01:29:29,089] [pool-1-thread-1] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-10-06 01:29:29,382] [pool-1-thread-3] Initializing /data/curtis/map/brown-fox: [testng] [2024-10-06 01:29:29,648] [pool-1-thread-11] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Green.tif: [testng] [2024-10-06 01:29:29,755] [pool-1-thread-2] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-10-06 01:29:31,727] [pool-1-thread-10] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-10-06 01:29:32,491] [pool-1-thread-3] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-10-06 01:29:32,864] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-10-06 01:29:33,144] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-10-06 01:29:33,359] [pool-1-thread-1] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-10-06 01:29:33,484] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-10-06 01:29:33,563] [pool-1-thread-7] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2024-10-06 01:29:33,714] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-10-06 01:29:33,844] [pool-1-thread-4] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-10-06 01:29:33,973] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] [2024-10-06 01:29:34,719] [pool-1-thread-5] Initializing /data/josiah/cell-Z14.C0.tiff: [testng] [2024-10-06 01:29:37,094] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0252.TIF: [testng] [2024-10-06 01:29:38,759] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-10-06 01:29:39,082] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-10-06 01:29:39,374] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-32.tiff: [testng] [2024-10-06 01:29:39,732] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-10-06 01:29:40,185] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0205.TIF: [testng] [2024-10-06 01:29:40,720] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-10-06 01:29:41,155] [pool-1-thread-1] Initializing /data/alexa/test4.tif: [testng] [2024-10-06 01:29:41,534] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z033.tif: [testng] [2024-10-06 01:29:41,913] [pool-1-thread-7] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-10-06 01:29:42,307] [pool-1-thread-5] Initializing /data/martin/tester.tif: [testng] [2024-10-06 01:29:45,670] [pool-1-thread-10] Initializing /data/qa-4965/2012_10_31_GFPbiflinmKate_29hpf_20x_1.2_7_001.tif: [testng] [2024-10-06 01:29:47,252] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-10-06 01:29:47,718] [pool-1-thread-12] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-10-06 01:29:48,110] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-10-06 01:29:48,471] [pool-1-thread-3] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-10-06 01:29:48,946] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-10-06 01:29:49,304] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-10-06 01:29:49,766] [pool-1-thread-8] Initializing /data/public/condensation/A10.pattern2.tif: [testng] [2024-10-06 01:29:50,250] [pool-1-thread-5] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-10-06 01:29:50,669] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP3.tiff: [testng] [2024-10-06 01:29:51,088] [pool-1-thread-9] Initializing /data/boguslaw/ret_crop_64x64x64.tif: [testng] [2024-10-06 01:29:53,756] [pool-1-thread-6] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-10-06 01:29:56,329] [pool-1-thread-10] Initializing 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01:30:12,990] [pool-1-thread-7] Initializing /data/josh/3D Projections of stack.tif: [testng] [2024-10-06 01:30:13,552] [pool-1-thread-8] Initializing /data/lzw/test.tif: [testng] [2024-10-06 01:30:16,442] [pool-1-thread-10] Initializing /data/public/libtiff/oxford.tif: [testng] [2024-10-06 01:30:17,027] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z028.tif: [testng] [2024-10-06 01:30:17,690] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] [2024-10-06 01:30:18,982] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2024-10-06 01:30:19,517] [pool-1-thread-3] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-10-06 01:30:20,048] [pool-1-thread-8] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-10-06 01:30:20,551] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs011.TIF: [testng] [2024-10-06 01:30:21,074] [pool-1-thread-11] 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01:36:34,136] [pool-1-thread-4] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-10-06 01:36:34,287] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0234.TIF: [testng] [2024-10-06 01:36:34,718] [pool-1-thread-1] Initializing /data/damian/36m.tiff: [testng] [2024-10-06 01:36:35,160] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-10-06 01:36:35,340] [pool-1-thread-3] Initializing /data/chris-wood/ticket-10050/cjw_stowers.tif: [testng] [2024-10-06 01:36:35,999] [pool-1-thread-12] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] [2024-10-06 01:36:36,210] [pool-1-thread-10] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-10-06 01:36:37,241] [pool-1-thread-5] Initializing /data/public/condensation/C4.pattern7.tif: [testng] [2024-10-06 01:36:37,941] [pool-1-thread-6] Initializing /data/josiah/cell-Z11.C1.tiff: [testng] [2024-10-06 01:36:38,430] [pool-1-thread-2] Initializing 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/data/public/libtiff/jim___dg.tif: [testng] [2024-10-06 01:36:46,650] [pool-1-thread-4] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-10-06 01:36:46,828] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-10-06 01:36:47,067] [pool-1-thread-8] Initializing /data/josh/stack.tif: [testng] [2024-10-06 01:36:47,563] [pool-1-thread-6] Initializing /data/misc/mri.avi: [testng] [2024-10-06 01:36:47,605] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-10-06 01:36:47,788] [pool-1-thread-12] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-10-06 01:36:48,036] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-10-06 01:36:48,194] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-10-06 01:36:48,518] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0218.TIF: [testng] [2024-10-06 01:36:48,742] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-10-06 01:36:49,442] [pool-1-thread-2] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-10-06 01:36:50,142] [pool-1-thread-4] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-10-06 01:36:50,365] [pool-1-thread-8] Initializing /data/tom-kazimiers/crop_two_chan.tiff: [testng] [2024-10-06 01:36:50,588] [pool-1-thread-5] Initializing /data/josiah/cell-Z4.C0.tiff: [testng] [2024-10-06 01:36:50,784] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-10-06 01:36:50,990] [pool-1-thread-7] Initializing /data/julien/Desantabarbaraduodenum.TIF: [testng] [2024-10-06 01:36:51,144] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-10-06 01:36:51,360] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-10-06 01:36:52,517] [pool-1-thread-2] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-10-06 01:36:53,474] [pool-1-thread-4] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs003.TIF: [testng] [2024-10-06 01:36:53,691] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-10-06 01:36:53,923] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0230.TIF: [testng] [2024-10-06 01:36:54,113] [pool-1-thread-3] Initializing /data/jae/first image.tif: [testng] [2024-10-06 01:36:54,205] [pool-1-thread-5] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-10-06 01:36:54,350] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2024-10-06 01:36:54,533] [pool-1-thread-6] Initializing /data/josiah/cell-Z26.C1.tiff: [testng] [2024-10-06 01:36:54,636] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-10-06 01:36:54,749] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-10-06 01:36:55,874] [pool-1-thread-2] Initializing /data/josiah/cell-Z17.C1.tiff: [testng] [2024-10-06 01:36:57,002] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z035.tif: [testng] [2024-10-06 01:36:57,212] [pool-1-thread-6] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-10-06 01:36:57,467] [pool-1-thread-3] Initializing /data/ascb/FND-27_PaladeGolgi_4800.tif: [testng] [2024-10-06 01:36:57,627] [pool-1-thread-11] Initializing /data/curtis/test2.tiff: [testng] [2024-10-06 01:36:57,862] [pool-1-thread-7] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-10-06 01:36:57,968] [pool-1-thread-8] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-10-06 01:36:58,225] [pool-1-thread-9] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2024-10-06 01:36:58,468] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-10-06 01:36:58,599] [pool-1-thread-5] Initializing /data/josiah/cell-Z31.C1.tiff: [testng] [2024-10-06 01:36:59,475] [pool-1-thread-10] Initializing /data/damian/18m.tiff: [testng] [2024-10-06 01:36:59,711] [pool-1-thread-2] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-10-06 01:37:00,214] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x16.tiff: [testng] [2024-10-06 01:37:00,611] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-10-06 01:37:00,863] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] [2024-10-06 01:37:01,200] [pool-1-thread-4] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-10-06 01:37:01,336] [pool-1-thread-5] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2024-10-06 01:37:01,473] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-10-06 01:37:02,667] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z003.tif: [testng] [2024-10-06 01:37:02,897] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-10-06 01:37:03,099] [pool-1-thread-6] Initializing /data/boguslaw/Rab582 3d det gfapBrdUmib1z24Live9-14-2007_11-55-58_AM copy.tif: [testng] [2024-10-06 01:37:03,321] [pool-1-thread-12] Initializing /data/edward/TestDoc2.tif: [testng] [2024-10-06 01:37:03,469] [pool-1-thread-11] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-10-06 01:37:03,525] [pool-1-thread-9] Initializing /data/tamjid/Image_843.tif: [testng] [2024-10-06 01:37:03,655] [pool-1-thread-1] Initializing /data/zstd-compressed/yeast.tif: [testng] [2024-10-06 01:37:04,566] [pool-1-thread-5] Initializing /data/josiah/cell-Z16.C0.tiff: [testng] [2024-10-06 01:37:05,380] [pool-1-thread-4] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-10-06 01:37:05,630] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2024-10-06 01:37:05,856] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-10-06 01:37:06,034] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-10-06 01:37:06,274] [pool-1-thread-2] Initializing /data/josiah/cell-Z27.C0.tiff: [testng] [2024-10-06 01:37:06,431] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-10-06 01:37:06,588] [pool-1-thread-1] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-10-06 01:37:07,325] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z002.tif: [testng] [2024-10-06 01:37:08,296] [pool-1-thread-5] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-10-06 01:37:08,723] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-06 01:37:09,031] [pool-1-thread-11] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-10-06 01:37:09,236] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-10-06 01:37:09,489] [pool-1-thread-2] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-10-06 01:37:09,610] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-10-06 01:37:09,755] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-10-06 01:37:09,914] [pool-1-thread-10] Initializing /data/kevino/_BF_00003.tif: [testng] [2024-10-06 01:37:10,436] [pool-1-thread-1] Initializing /data/josiah/cell-Z20.C0.tiff: [testng] [2024-10-06 01:37:11,186] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-10-06 01:37:11,774] [pool-1-thread-12] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-10-06 01:37:11,997] [pool-1-thread-5] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-10-06 01:37:12,607] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-10-06 01:37:12,717] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-10-06 01:37:12,858] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z027.tif: [testng] [2024-10-06 01:37:12,972] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 minutes 28 seconds Finished: SUCCESS