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Started by upstream project "BIOFORMATS-test-repo" build number 213 originally caused by: Started by upstream project "Trigger" build number 240 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins4533434734587352466.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33780_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:12:08,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 06:12:08,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 06:12:08,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:12:08,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:12:08,183 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:12:08,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:12:08,185 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:12:08,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:12:08,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:12:08,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:12:08,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:12:08,399 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:12:08,400 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:12:08,400 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 06:12:08,401 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 06:12:08,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 217 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 06:12:08,410] [main] java.version = 11.0.16 [testng] 06:12:08,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:12:08,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:08,461 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-12-08.log] [testng] 06:12:08,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 06:12:08,465] [main] testng.directory = /data [testng] [2024-10-08 06:12:08,465] [main] testng.configDirectory = /config [testng] [2024-10-08 06:12:08,475] [main] testng.multiplier = 1.0 [testng] [2024-10-08 06:12:08,477] [main] testng.in-memory = false [testng] [2024-10-08 06:12:08,477] [main] testng.allow-missing = false [testng] [2024-10-08 06:12:08,477] [main] user.language = en [testng] [2024-10-08 06:12:08,477] [main] user.country = ${user.country} [testng] [2024-10-08 06:12:08,477] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 06:12:25,350] [main] ---------------------------------------- [testng] [2024-10-08 06:12:25,350] [main] Total files: 21 [testng] [2024-10-08 06:12:25,350] [main] Scan time: 16.873 s (803 ms/file) [testng] [2024-10-08 06:12:25,350] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 06:12:51,850] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 06:12:51,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:12:51,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:51,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-12-51.log] [testng] 06:12:51,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bdd4e6e - End of configuration. [testng] [2024-10-08 06:12:53,193] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 06:12:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:12:53,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:53,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-12-53.log] [testng] 06:12:53,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61dcdbd - End of configuration. [testng] [2024-10-08 06:12:54,585] [pool-1-thread-11] Initializing /data/stefan/001_q06.txt: [testng] 06:12:54,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:12:54,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:54,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-12-54.log] [testng] 06:12:54,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3731a9 - End of configuration. [testng] [2024-10-08 06:12:56,109] [pool-1-thread-10] Initializing /data/stefan/001_q10.txt: [testng] 06:12:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:12:56,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:56,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-12-56.log] [testng] 06:12:56,111 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6716dd6e - End of configuration. [testng] [2024-10-08 06:12:58,048] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt: [testng] 06:12:58,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:12:58,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:58,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-12-58.log] [testng] 06:12:58,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@87a05bf - End of configuration. [testng] [2024-10-08 06:12:59,030] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt: [testng] 06:12:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:12:59,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:59,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-12-59.log] [testng] 06:12:59,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41afccfe - End of configuration. [testng] [2024-10-08 06:13:00,053] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 06:13:00,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:13:00,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:00,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-13-00.log] [testng] 06:13:00,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cb1339f - End of configuration. [testng] [2024-10-08 06:13:00,942] [pool-1-thread-6] Initializing /data/stefan/001_q12.txt: [testng] 06:13:00,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:13:00,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:00,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-13-00.log] [testng] 06:13:00,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66fa26cd - End of configuration. [testng] [2024-10-08 06:13:02,385] [pool-1-thread-5] Initializing /data/stefan/001_q03.txt: [testng] 06:13:02,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:13:02,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:02,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-13-02.log] [testng] 06:13:02,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43675c6d - End of configuration. [testng] [2024-10-08 06:13:03,273] [pool-1-thread-4] Initializing /data/stefan/001_q11.txt: [testng] 06:13:03,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:13:03,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:03,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-13-03.log] [testng] 06:13:03,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45514198 - End of configuration. [testng] [2024-10-08 06:13:04,893] [pool-1-thread-3] Initializing /data/stefan/001_q07.txt: [testng] 06:13:04,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:13:04,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:04,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-13-04.log] [testng] 06:13:04,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b22d8c7 - End of configuration. [testng] [2024-10-08 06:13:07,277] [pool-1-thread-2] Initializing /data/stefan/001_q09.txt: [testng] 06:13:07,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:13:07,277 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:07,278 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-13-07.log] [testng] 06:13:07,278 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc65396 - End of configuration. [testng] [2024-10-08 06:13:22,531] [pool-1-thread-7] Initializing /data/stefan/001_q17.txt: [testng] [2024-10-08 06:13:23,544] [pool-1-thread-1] Initializing /data/stefan/001_q13.txt: [testng] [2024-10-08 06:13:24,803] [pool-1-thread-5] Initializing /data/stefan/001_q18.txt: [testng] [2024-10-08 06:13:26,139] [pool-1-thread-8] Initializing /data/stefan/001_q02.txt: [testng] [2024-10-08 06:13:27,296] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-08 06:13:29,079] [pool-1-thread-9] Initializing /data/stefan/001_q15.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 40 seconds Finished: SUCCESS