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Started by upstream project "BIOFORMATS-test-repo" build number 213 originally caused by: Started by upstream project "Trigger" build number 240 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins601325896316247383.sh + '[' visitech = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_33781_merge_ci -v /uod/idr/repos/curated/visitech:/data -v /uod/idr-scratch/merge-ci/curated/visitech:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 06:13:21,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:13:21,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:13:21,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:13:21,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:13:21,451 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:13:21,451 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:13:21,451 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:13:21,451 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:13:21,451 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6340e5f0 - End of configuration. [testng] 06:13:21,452 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1c7696c6 - Registering current configuration as safe fallback point [testng] 06:13:21,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@60099951 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 473 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-08 06:13:21,461] [main] java.version = 11.0.16 [testng] 06:13:21,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:13:21,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:21,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-08_06-13-21.log] [testng] 06:13:21,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-08 06:13:21,506] [main] testng.directory = /data [testng] [2024-10-08 06:13:21,506] [main] testng.configDirectory = /config [testng] [2024-10-08 06:13:21,516] [main] testng.multiplier = 1.0 [testng] [2024-10-08 06:13:21,517] [main] testng.in-memory = false [testng] [2024-10-08 06:13:21,517] [main] testng.allow-missing = false [testng] [2024-10-08 06:13:21,517] [main] user.language = en [testng] [2024-10-08 06:13:21,517] [main] user.country = ${user.country} [testng] [2024-10-08 06:13:21,517] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-08 06:13:31,959] [main] ---------------------------------------- [testng] [2024-10-08 06:13:31,959] [main] Total files: 45 [testng] [2024-10-08 06:13:31,959] [main] Scan time: 10.441 s (232 ms/file) [testng] [2024-10-08 06:13:31,959] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-08 06:13:50,599] [pool-1-thread-1] Initializing /data/scott/2 Channel z timelaps original/2 channel_Z_timelaps Report.html: [testng] 06:13:50,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:13:50,600 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:50,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-08_06-13-50.log] [testng] 06:13:50,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce85e8e - End of configuration. [testng] [2024-10-08 06:13:50,923] [pool-1-thread-12] Initializing /data/scott/2 Channel Z timelaps repeat/2 channel_Z_timelaps 2 Report.html: [testng] 06:13:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:13:50,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:50,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-08_06-13-50.log] [testng] 06:13:50,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0a8e94 - End of configuration. [testng] [2024-10-08 06:13:51,224] [pool-1-thread-11] Initializing /data/brian/ScreenShot.jpg: [testng] 06:13:51,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:13:51,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:51,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-08_06-13-51.log] [testng] 06:13:51,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@348e255d - End of configuration. [testng] [2024-10-08 06:13:51,392] [pool-1-thread-10] Initializing /data/brian/070613reA1_2 Report.html: [testng] 06:13:51,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:13:51,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:51,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-08_06-13-51.log] [testng] 06:13:51,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25329950 - End of configuration. [testng] [2024-10-08 06:13:51,664] [pool-1-thread-9] Initializing /data/scott/2 channel_Z_timelaps/525.tif: [testng] 06:13:51,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:13:51,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:51,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-08_06-13-51.log] [testng] 06:13:51,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59256847 - End of configuration. [testng] [2024-10-08 06:13:52,335] [pool-1-thread-8] Initializing /data/scott/2 channel_Z_timelaps/2 channel_Z_timelaps Report.html: [testng] 06:13:52,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:13:52,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:52,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-08_06-13-52.log] [testng] 06:13:52,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dba530f - End of configuration. [testng] [2024-10-08 06:13:52,535] [pool-1-thread-7] Initializing /data/brian/060916-01-561.tif: [testng] 06:13:52,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:13:52,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:52,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-08_06-13-52.log] [testng] 06:13:52,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2405b1b3 - End of configuration. [testng] [2024-10-08 06:13:53,287] [pool-1-thread-6] Initializing /data/oliver/20x/491 Report.html: [testng] 06:13:53,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:13:53,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:53,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-08_06-13-53.log] [testng] 06:13:53,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c021be - End of configuration. [testng] [2024-10-08 06:13:53,785] [pool-1-thread-5] Initializing /data/brian/060916-01 Report.html: [testng] 06:13:53,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:13:53,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:53,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-08_06-13-53.log] [testng] 06:13:53,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27b9c900 - End of configuration. [testng] [2024-10-08 06:13:54,096] [pool-1-thread-4] Initializing /data/kazem/noname Report.html: [testng] 06:13:54,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:13:54,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:54,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-08_06-13-54.log] [testng] 06:13:54,097 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46af2f3e - End of configuration. [testng] [2024-10-08 06:13:54,452] [pool-1-thread-3] Initializing /data/scott/2 channel z 6 xy stage positions/2 chanel z 3x2 GRID Report.html: [testng] 06:13:54,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:13:54,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:54,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-08_06-13-54.log] [testng] 06:13:54,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fff0961 - End of configuration. [testng] [2024-10-08 06:13:54,849] [pool-1-thread-2] Initializing /data/oliver/20x/488 Report.html: [testng] 06:13:54,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:13:54,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:13:54,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-08_06-13-54.log] [testng] 06:13:54,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6313251e - End of configuration. [testng] [2024-10-08 06:13:59,498] [pool-1-thread-11] Initializing /data/scott/2 Channel z no timelaps/2 chanel z no time Report.html: [testng] [2024-10-08 06:14:01,137] [pool-1-thread-9] Initializing /data/brian/060916-01-488.tif: [testng] [2024-10-08 06:14:02,165] [pool-1-thread-7] Initializing /data/scott/2 channel_Z_timelaps/597.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 11 seconds Finished: SUCCESS