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Started by upstream project "BIOFORMATS-test-repo" build number 216 originally caused by: Started by upstream project "Trigger" build number 243 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins1862439771089346413.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34215_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:23:24,459 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:24,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:23:24,461 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:24,462 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:24,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:24,462 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:24,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:24,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:24,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:24,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:24,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:24,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:24,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:24,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:24,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:24,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:24,660 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:24,661 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:24,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:24,661 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:24,661 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:23:24,662 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:23:24,662 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 199 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-10 01:23:24,675] [main] java.version = 21 [testng] 01:23:24,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:24,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:24,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-10_01-23-24.log] [testng] 01:23:24,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-10 01:23:24,725] [main] testng.directory = /data [testng] [2024-10-10 01:23:24,726] [main] testng.configDirectory = /config [testng] [2024-10-10 01:23:24,735] [main] testng.multiplier = 1.0 [testng] [2024-10-10 01:23:24,735] [main] testng.in-memory = false [testng] [2024-10-10 01:23:24,735] [main] testng.allow-missing = false [testng] [2024-10-10 01:23:24,735] [main] user.language = en [testng] [2024-10-10 01:23:24,735] [main] user.country = ${user.country} [testng] [2024-10-10 01:23:24,735] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-10 01:24:30,388] [main] ---------------------------------------- [testng] [2024-10-10 01:24:30,388] [main] Total files: 4426 [testng] [2024-10-10 01:24:30,388] [main] Scan time: 65.652 s (14 ms/file) [testng] [2024-10-10 01:24:30,402] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-10 01:52:16,173] [pool-1-thread-1] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] 01:52:16,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:52:16,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:16,175 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-10_01-52-16.log] [testng] 01:52:16,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648805d0 - End of configuration. [testng] [2024-10-10 01:52:17,677] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] 01:52:17,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:52:17,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:17,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-10_01-52-17.log] [testng] 01:52:17,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c931509 - End of configuration. [testng] [2024-10-10 01:52:19,336] [pool-1-thread-11] Initializing /data/qa-4968/twocars2.tif: [testng] 01:52:19,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:52:19,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:19,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-10_01-52-19.log] [testng] 01:52:19,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66098a60 - End of configuration. [testng] [2024-10-10 01:52:21,213] [pool-1-thread-10] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] 01:52:21,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:52:21,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:21,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-10_01-52-21.log] [testng] 01:52:21,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd1555e - End of configuration. [testng] [2024-10-10 01:52:25,019] [pool-1-thread-9] Initializing /data/ascb/CYT-23_BaintonGlycogenB_4800.tif: [testng] 01:52:25,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:52:25,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:25,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-10_01-52-25.log] [testng] 01:52:25,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4315d7ec - End of configuration. [testng] [2024-10-10 01:52:28,763] [pool-1-thread-8] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] 01:52:28,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:52:28,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:28,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-10_01-52-28.log] [testng] 01:52:28,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507c02dc - End of configuration. [testng] [2024-10-10 01:52:30,954] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] 01:52:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:52:30,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:30,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-10_01-52-30.log] [testng] 01:52:30,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36bfc4b4 - End of configuration. [testng] [2024-10-10 01:52:32,742] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z050.tif: [testng] 01:52:32,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:52:32,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:32,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-10_01-52-32.log] [testng] 01:52:32,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b41a8 - End of configuration. [testng] [2024-10-10 01:52:34,438] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] 01:52:34,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:52:34,438 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:34,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-10_01-52-34.log] [testng] 01:52:34,439 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eda4dee - End of configuration. [testng] [2024-10-10 01:52:35,730] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] 01:52:35,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:52:35,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:35,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-10_01-52-35.log] [testng] 01:52:35,732 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f309af4 - End of configuration. [testng] [2024-10-10 01:52:37,246] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips_fourteen.tiff: [testng] 01:52:37,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:52:37,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:37,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-10_01-52-37.log] [testng] 01:52:37,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497ea004 - End of configuration. [testng] [2024-10-10 01:52:39,263] [pool-1-thread-2] Initializing /data/curtis/tubhiswt-5D.tif: [testng] 01:52:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:52:39,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:39,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-10_01-52-39.log] [testng] 01:52:39,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30ebebce - End of configuration. [testng] [2024-10-10 01:52:53,240] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z049.tif: [testng] [2024-10-10 01:52:54,587] [pool-1-thread-11] Initializing /data/josiah/cell-Z21.C1.tiff: [testng] [2024-10-10 01:52:56,149] [pool-1-thread-5] Initializing /data/tobias/test002_1.tif: [testng] [2024-10-10 01:52:58,270] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-10-10 01:52:59,894] [pool-1-thread-7] Initializing /data/josiah/cell-Z13.C1.tiff: [testng] [2024-10-10 01:53:01,491] [pool-1-thread-1] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-10-10 01:53:02,629] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-10-10 01:53:03,690] [pool-1-thread-12] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-10-10 01:53:04,699] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-10-10 01:53:06,036] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-10-10 01:53:19,448] [pool-1-thread-8] Initializing /data/tom-kazimiers/test_exiftool2_resave2.tiff: [testng] [2024-10-10 01:53:20,887] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z041.tif: [testng] [2024-10-10 01:53:22,846] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-10-10 01:53:24,810] [pool-1-thread-12] Initializing /data/damian/30m.tiff: [testng] [2024-10-10 01:53:25,881] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0226.TIF: [testng] [2024-10-10 01:53:27,017] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z010.tif: [testng] [2024-10-10 01:53:29,120] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-10-10 01:53:30,346] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-64.tiff: [testng] [2024-10-10 01:53:31,589] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z006.tif: [testng] [2024-10-10 01:53:33,317] [pool-1-thread-7] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-10-10 01:53:35,268] [pool-1-thread-10] Initializing /data/stephane/Copy of listeria + clathrin1_w3Cy5.tif: [testng] [2024-10-10 01:53:42,676] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-10-10 01:53:45,734] [pool-1-thread-10] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-10-10 01:53:48,862] [pool-1-thread-11] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-10-10 01:53:50,445] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z014.tif: [testng] [2024-10-10 01:53:52,232] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z029.tif: [testng] [2024-10-10 01:53:54,664] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0240.TIF: [testng] [2024-10-10 01:53:56,525] [pool-1-thread-3] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2024-10-10 01:53:58,518] [pool-1-thread-8] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2024-10-10 01:54:00,544] [pool-1-thread-2] Initializing /data/josh/NESa_C2_TP1.tiff: [testng] [2024-10-10 01:54:02,124] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z037.tif: [testng] [2024-10-10 01:54:03,543] [pool-1-thread-6] Initializing /data/curtis/test2.tiff: [testng] [2024-10-10 01:54:12,950] [pool-1-thread-1] Initializing /data/kevino/_BF_00003.tif: [testng] [2024-10-10 01:54:14,657] [pool-1-thread-10] Initializing /data/ascb/CYT-43_HowellAcinarUnlabeled_4800.tif: [testng] [2024-10-10 01:54:17,557] [pool-1-thread-6] Initializing /data/tamjid/Image_843.tif: [testng] [2024-10-10 01:54:18,912] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z012.tif: [testng] [2024-10-10 01:54:20,011] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-10-10 01:54:21,167] [pool-1-thread-5] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-10-10 01:54:22,351] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-10-10 01:54:23,488] [pool-1-thread-2] Initializing /data/qa-7589/CalGrid.tif: [testng] [2024-10-10 01:54:25,306] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x16.tiff: [testng] [2024-10-10 01:54:26,850] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] [2024-10-10 01:54:28,346] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z007.tif: [testng] [2024-10-10 01:54:30,268] [pool-1-thread-3] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-10-10 01:54:39,822] [pool-1-thread-1] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-10-10 01:54:45,208] 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Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-10-10 02:13:25,743] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x48.tiff: [testng] [2024-10-10 02:13:28,490] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-10-10 02:13:29,708] [pool-1-thread-9] Initializing /data/wayne/mBoeglin_lzw/mm_7.1.2.0.tif: [testng] [2024-10-10 02:13:30,482] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0243.TIF: [testng] [2024-10-10 02:13:31,375] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs013.TIF: [testng] [2024-10-10 02:13:31,832] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-10-10 02:13:32,292] [pool-1-thread-5] Initializing /data/paulh/quickpollen4_w3_t1.tif: [testng] [2024-10-10 02:13:32,815] [pool-1-thread-2] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] 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02:13:47,554] [pool-1-thread-5] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-10-10 02:13:48,164] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] [2024-10-10 02:13:48,856] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-10-10 02:13:50,247] [pool-1-thread-12] Initializing /data/ascb/FND-27_PaladeGolgi_4800.tif: [testng] [2024-10-10 02:13:53,416] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z001.tif: [testng] [2024-10-10 02:13:55,776] [pool-1-thread-7] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-10-10 02:13:56,751] [pool-1-thread-1] Initializing /data/damian/03m.tiff: [testng] [2024-10-10 02:13:57,575] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-10-10 02:13:58,423] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-10-10 02:13:59,183] 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02:14:11,257] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-10-10 02:14:12,313] [pool-1-thread-5] Initializing /data/misc/before 1_C2_TP1.tiff: [testng] [2024-10-10 02:14:13,217] [pool-1-thread-7] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-10-10 02:14:18,242] [pool-1-thread-2] Initializing /data/stephane/Fluid Dynamics.tif: [testng] [2024-10-10 02:14:21,062] [pool-1-thread-3] Initializing /data/ascb/FND-24_GeorgeEPalade.tif: [testng] [2024-10-10 02:14:22,789] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-10-10 02:14:24,493] [pool-1-thread-11] Initializing /data/jayne/Zst_42/WTZER_Series42_z000_ch00.tif: [testng] [2024-10-10 02:14:25,896] [pool-1-thread-1] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Red.tif: [testng] [2024-10-10 02:14:26,696] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP3.tiff: [testng] [2024-10-10 02:14:28,694] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-10-10 02:14:30,090] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-32.tiff: [testng] [2024-10-10 02:14:31,645] [pool-1-thread-12] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-10-10 02:14:33,294] [pool-1-thread-8] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-10-10 02:14:41,232] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-10-10 02:14:47,039] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x64.tiff: [testng] [2024-10-10 02:14:49,972] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-10-10 02:14:51,766] [pool-1-thread-4] Initializing /data/josiah/cell-Z4.C0.tiff: [testng] [2024-10-10 02:14:53,594] [pool-1-thread-6] Initializing /data/josiah/cell-Z35.C1.tiff: [testng] [2024-10-10 02:14:54,971] [pool-1-thread-12] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-10-10 02:14:56,631] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-10-10 02:14:58,497] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-10-10 02:15:00,919] [pool-1-thread-10] Initializing /data/public/condensation/A10.pattern2.tif: [testng] [2024-10-10 02:15:03,326] [pool-1-thread-3] Initializing /data/curtis/test3.tiff: [testng] [2024-10-10 02:15:09,251] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-10-10 02:15:14,197] [pool-1-thread-2] Initializing /data/misc/wtembryo.tiff: [testng] [2024-10-10 02:15:17,713] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-10-10 02:15:24,540] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-10-10 02:15:27,209] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [2024-10-10 02:15:28,774] [pool-1-thread-6] Initializing /data/public/libtiff/jim___cg.tif: [testng] [2024-10-10 02:15:30,360] [pool-1-thread-12] Initializing /data/curtis/map/brown-fox: [testng] [2024-10-10 02:15:32,470] [pool-1-thread-4] Initializing /data/samples/cielab/SKI_TC803_rel.tif: [testng] [2024-10-10 02:15:34,251] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0231.TIF: [testng] [2024-10-10 02:15:35,799] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2024-10-10 02:15:37,534] [pool-1-thread-1] Initializing /data/ascb/CYT-57_HowellClatharinDetails_4800.tif: [testng] [2024-10-10 02:15:40,755] [pool-1-thread-8] Initializing /data/jcb/SuppFig5D.tif: [testng] [2024-10-10 02:15:42,143] [pool-1-thread-2] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-10-10 02:15:48,639] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-10-10 02:15:50,025] [pool-1-thread-3] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] [2024-10-10 02:15:51,518] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z053.tif: [testng] [2024-10-10 02:15:53,351] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0217.TIF: [testng] [2024-10-10 02:15:55,136] [pool-1-thread-7] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-10-10 02:15:56,680] [pool-1-thread-4] Initializing /data/ascb/bad/FND-17_FawcettNucleus_4800.tif: [testng] [2024-10-10 02:15:58,241] [pool-1-thread-10] Initializing /data/samples/melissa/strike-uncompressed.tiff: [testng] [2024-10-10 02:15:59,846] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-10-10 02:16:01,657] [pool-1-thread-1] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-10-10 02:16:04,035] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z025.tif: [testng] [2024-10-10 02:16:09,818] [pool-1-thread-8] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] [2024-10-10 02:16:15,100] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z011.tif: [testng] [2024-10-10 02:16:16,974] [pool-1-thread-9] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-10-10 02:16:18,843] [pool-1-thread-3] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-10-10 02:16:20,583] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs016.TIF: [testng] [2024-10-10 02:16:22,549] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-10-10 02:16:24,210] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs009.TIF: [testng] [2024-10-10 02:16:26,176] [pool-1-thread-5] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-10-10 02:16:34,998] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-10-10 02:16:37,081] [pool-1-thread-1] Initializing /data/ascb/bad/FND-18_FawcettGolgi_4800.tif: [testng] [2024-10-10 02:16:40,958] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z028.tif: [testng] [2024-10-10 02:16:43,191] [pool-1-thread-4] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-10-10 02:16:45,806] [pool-1-thread-11] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-10-10 02:16:48,191] [pool-1-thread-12] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-10-10 02:16:51,331] [pool-1-thread-6] Initializing /data/public/libtiff/dscf0013.tif: [testng] [2024-10-10 02:16:53,455] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-10-10 02:16:55,453] [pool-1-thread-5] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-10-10 02:16:58,007] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP1.tiff: [testng] [2024-10-10 02:17:00,244] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x16.tiff: [testng] [2024-10-10 02:17:01,944] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z018.tif: [testng] [2024-10-10 02:17:10,332] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z033.tif: [testng] [2024-10-10 02:17:13,583] [pool-1-thread-8] Initializing /data/brian/061124MitogreenDIV3Cell2-1 copy.tif: [testng] [2024-10-10 02:17:15,868] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_ROMM.tif: [testng] [2024-10-10 02:17:21,274] [pool-1-thread-10] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-10-10 02:17:24,365] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2024-10-10 02:17:27,031] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] [2024-10-10 02:17:29,909] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z027.tif: [testng] [2024-10-10 02:17:32,451] [pool-1-thread-7] Initializing /data/julien/baldindq-OVA.TIF: [testng] [2024-10-10 02:17:35,121] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2024-10-10 02:17:37,571] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-10-10 02:17:41,069] [pool-1-thread-1] Initializing /data/kelsey/Live-Dead Assay 4000 nm pitch PU.TIF: [testng] [2024-10-10 02:17:43,593] [pool-1-thread-2] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-10-10 02:17:52,370] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x64.tiff: [testng] [2024-10-10 02:17:57,054] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z014.tif: [testng] [2024-10-10 02:18:00,282] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-10-10 02:18:03,904] [pool-1-thread-9] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-10-10 02:18:06,632] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z032.tif: [testng] [2024-10-10 02:18:10,059] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z035.tif: [testng] [2024-10-10 02:18:12,887] [pool-1-thread-3] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-10-10 02:18:15,681] [pool-1-thread-5] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2024-10-10 02:18:18,507] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0236.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 55 minutes 16 seconds Finished: SUCCESS