Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins5663786474779405790.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34378_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:36:19,327 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:36:19,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:36:19,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:19,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:19,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:19,330 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:19,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:19,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:19,331 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:19,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:19,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:19,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:19,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:19,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:19,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:19,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:19,597 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:19,597 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:19,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:19,598 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:19,598 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:36:19,599 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:36:19,599 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 01:36:19,608] [main] java.version = 1.8.0_342 [testng] 01:36:19,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:19,612 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:19,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_01-36-19.log] [testng] 01:36:19,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 01:36:19,662] [main] testng.directory = /data [testng] [2024-10-11 01:36:19,663] [main] testng.configDirectory = /config [testng] [2024-10-11 01:36:19,674] [main] testng.multiplier = 1.0 [testng] [2024-10-11 01:36:19,674] [main] testng.in-memory = false [testng] [2024-10-11 01:36:19,674] [main] testng.allow-missing = false [testng] [2024-10-11 01:36:19,674] [main] user.language = en [testng] [2024-10-11 01:36:19,674] [main] user.country = ${user.country} [testng] [2024-10-11 01:36:19,675] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 01:37:12,544] [main] ---------------------------------------- [testng] [2024-10-11 01:37:12,544] [main] Total files: 315 [testng] [2024-10-11 01:37:12,544] [main] Scan time: 52.869 s (167 ms/file) [testng] [2024-10-11 01:37:12,544] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 01:59:03,076] [pool-1-thread-1] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] 01:59:03,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:59:03,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:03,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_01-59-03.log] [testng] 01:59:03,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a35f29b - End of configuration. [testng] [2024-10-11 02:00:06,919] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir: [testng] 02:00:06,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:00:06,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:06,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_02-00-06.log] [testng] 02:00:06,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30738091 - End of configuration. [testng] [2024-10-11 02:00:09,820] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] 02:00:09,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:00:09,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:09,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_02-00-09.log] [testng] 02:00:09,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7086ced1 - End of configuration. [testng] [2024-10-11 02:00:10,742] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 02:00:10,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:00:10,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:10,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_02-00-10.log] [testng] 02:00:10,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1f3641 - End of configuration. [testng] [2024-10-11 02:00:12,213] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir: [testng] 02:00:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:00:12,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:12,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_02-00-12.log] [testng] 02:00:12,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a4714c1 - End of configuration. [testng] [2024-10-11 02:00:33,076] [pool-1-thread-8] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] 02:00:33,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:00:33,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:33,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_02-00-33.log] [testng] 02:00:33,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1084a54f - End of configuration. [testng] [2024-10-11 02:00:35,151] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 02:00:35,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:00:35,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:35,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_02-00-35.log] [testng] 02:00:35,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a5d25d6 - End of configuration. [testng] [2024-10-11 02:00:36,424] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir: [testng] 02:00:36,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:00:36,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:36,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_02-00-36.log] [testng] 02:00:36,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2023065d - End of configuration. [testng] [2024-10-11 02:00:37,383] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] 02:00:37,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:00:37,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:37,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_02-00-37.log] [testng] 02:00:37,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67f2d712 - End of configuration. [testng] [2024-10-11 02:00:39,502] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] 02:00:39,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:00:39,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:39,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_02-00-39.log] [testng] 02:00:39,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e46d890 - End of configuration. [testng] [2024-10-11 02:00:41,432] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] 02:00:41,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:00:41,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:41,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_02-00-41.log] [testng] 02:00:41,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e00c44 - End of configuration. [testng] [2024-10-11 02:00:42,660] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] 02:00:42,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:00:42,660 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:00:42,661 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_02-00-42.log] [testng] 02:00:42,661 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e18343 - End of configuration. [testng] [2024-10-11 02:00:52,636] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-10-11 02:00:54,899] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-10-11 02:00:56,176] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-10-11 02:00:59,089] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-10-11 02:01:02,845] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-10-11 02:01:04,243] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-10-11 02:01:05,287] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-10-11 02:01:13,523] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-10-11 02:01:14,828] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-10-11 02:01:16,797] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-10-11 02:01:19,048] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-11 02:01:20,815] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-10-11 02:01:23,321] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-10-11 02:01:24,833] [pool-1-thread-4] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-10-11 02:01:26,771] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-10-11 02:01:27,960] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-10-11 02:01:36,486] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-10-11 02:01:39,967] [pool-1-thread-11] Initializing /data/olympus/XYZt.oir: [testng] [2024-10-11 02:01:43,621] [pool-1-thread-7] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-10-11 02:01:46,260] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-10-11 02:01:47,838] [pool-1-thread-8] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-10-11 02:01:48,734] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-10-11 02:01:50,188] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-10-11 02:01:51,776] [pool-1-thread-12] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-10-11 02:02:35,109] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-10-11 02:02:37,965] [pool-1-thread-7] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-10-11 02:02:43,126] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-10-11 02:02:47,089] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-10-11 02:02:49,219] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-10-11 02:02:50,323] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-10-11 02:02:56,604] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-10-11 02:03:04,297] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-10-11 02:03:06,373] [pool-1-thread-5] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-10-11 02:03:08,785] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-10-11 02:03:12,342] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-10-11 02:03:17,654] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-10-11 02:03:25,009] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-10-11 02:03:27,257] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-10-11 02:03:27,964] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-10-11 02:03:29,489] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-10-11 02:03:35,308] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-11 02:03:41,665] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-10-11 02:03:43,949] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-10-11 02:03:45,834] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-10-11 02:03:51,126] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-10-11 02:03:57,736] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-10-11 02:03:58,666] [pool-1-thread-2] Initializing /data/qa-17335/1.oir: [testng] [2024-10-11 02:04:01,488] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-10-11 02:04:04,129] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-10-11 02:04:11,405] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-10-11 02:04:14,662] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi: [testng] [2024-10-11 02:04:16,775] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-10-11 02:04:18,698] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-10-11 02:04:20,590] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-10-11 02:04:23,766] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-10-11 02:04:28,416] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-10-11 02:04:30,691] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-10-11 02:04:35,980] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-10-11 02:04:38,692] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-10-11 02:04:40,251] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-10-11 02:04:48,081] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-10-11 02:04:51,608] [pool-1-thread-10] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-10-11 02:04:57,013] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-10-11 02:05:02,186] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-10-11 02:05:05,772] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-10-11 02:05:09,684] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-10-11 02:05:14,450] [pool-1-thread-10] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-10-11 02:05:17,387] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-10-11 02:05:20,129] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-10-11 02:05:21,784] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-10-11 02:05:24,039] [pool-1-thread-4] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-10-11 02:05:52,868] [pool-1-thread-2] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-10-11 02:05:57,076] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-10-11 02:06:01,066] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-10-11 02:06:02,614] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-10-11 02:06:05,907] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-10-11 02:06:08,638] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-10-11 02:06:12,031] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-10-11 02:06:14,685] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-10-11 02:06:17,183] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-10-11 02:06:18,526] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-10-11 02:06:28,479] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-10-11 02:06:33,751] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-10-11 02:06:37,992] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-10-11 02:06:40,983] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-10-11 02:06:44,355] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-10-11 02:06:46,797] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-10-11 02:06:48,015] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-10-11 02:06:49,812] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-10-11 02:06:50,846] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-10-11 02:06:57,231] [pool-1-thread-10] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-10-11 02:06:59,386] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-10-11 02:07:01,570] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-10-11 02:07:02,831] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-10-11 02:07:07,490] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-10-11 02:07:09,565] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-10-11 02:07:14,749] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-10-11 02:07:15,557] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-10-11 02:07:19,074] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-10-11 02:07:19,816] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-10-11 02:07:29,209] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-10-11 02:07:31,738] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-10-11 02:07:37,046] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-10-11 02:07:41,230] [pool-1-thread-11] Initializing /data/qa-17917/f10010.oir: [testng] [2024-10-11 02:09:23,624] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-10-11 02:09:26,104] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-10-11 02:09:29,938] [pool-1-thread-3] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-10-11 02:09:37,305] [pool-1-thread-9] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-10-11 02:09:43,649] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-10-11 02:10:07,026] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-10-11 02:10:08,684] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-10-11 02:10:12,837] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-10-11 02:10:13,596] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-10-11 02:10:14,685] [pool-1-thread-2] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-10-11 02:10:20,278] [pool-1-thread-6] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-10-11 02:10:21,676] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-10-11 02:10:23,054] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-10-11 02:10:26,747] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-10-11 02:10:30,925] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-10-11 02:10:33,006] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-10-11 02:10:35,075] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-10-11 02:10:38,355] [pool-1-thread-10] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-10-11 02:10:41,888] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-10-11 02:10:43,718] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-10-11 02:10:46,622] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-10-11 02:10:52,740] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-10-11 02:11:07,536] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-10-11 02:11:09,952] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-10-11 02:11:16,943] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-10-11 02:11:23,674] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-10-11 02:11:30,085] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-10-11 02:11:37,630] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-10-11 02:11:41,923] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-10-11 02:11:45,946] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-10-11 02:11:53,361] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-10-11 02:11:56,438] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-10-11 02:12:07,416] [pool-1-thread-2] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-10-11 02:12:10,363] [pool-1-thread-9] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-10-11 02:12:13,098] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-10-11 02:12:21,025] [pool-1-thread-6] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-10-11 02:12:22,541] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-10-11 02:12:27,659] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-10-11 02:12:30,810] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-10-11 02:12:31,987] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-10-11 02:12:34,108] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-10-11 02:12:41,134] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-10-11 02:12:43,910] [pool-1-thread-3] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-10-11 02:12:46,010] [pool-1-thread-2] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-10-11 02:12:51,022] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-10-11 02:13:02,318] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-10-11 02:13:04,796] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-10-11 02:13:05,463] [pool-1-thread-2] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-10-11 02:13:07,032] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-10-11 02:13:11,493] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-10-11 02:13:16,027] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-10-11 02:13:18,559] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-10-11 02:13:21,552] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-10-11 02:13:34,882] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-10-11 02:13:37,921] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-10-11 02:13:39,909] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-10-11 02:13:43,501] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-10-11 02:13:45,177] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-10-11 02:13:51,594] [pool-1-thread-9] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-10-11 02:13:53,971] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-10-11 02:13:58,225] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-10-11 02:14:36,539] [pool-1-thread-9] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-10-11 02:14:46,943] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-10-11 02:14:56,994] [pool-1-thread-3] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-10-11 02:15:20,991] [pool-1-thread-9] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-10-11 02:15:22,897] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-11 02:15:51,881] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-10-11 02:16:04,218] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-10-11 02:16:15,492] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-10-11 02:16:17,125] [pool-1-thread-9] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-10-11 02:16:19,930] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-10-11 02:16:27,283] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-10-11 02:16:48,783] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-10-11 02:17:00,083] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-10-11 02:17:12,823] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-10-11 02:17:15,763] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 79 minutes 38 seconds Finished: SUCCESS