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Started by upstream project "BIOFORMATS-test-repo" build number 217 originally caused by: Started by upstream project "Trigger" build number 244 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15365561749383745721.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_34379_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:36:19,652 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:36:19,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:36:19,654 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:19,655 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:19,655 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:19,656 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:19,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:19,656 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:19,657 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:19,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:19,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:19,657 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:19,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:19,888 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:19,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:19,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:19,925 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:19,926 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:19,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:19,926 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:19,926 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:36:19,927 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:36:19,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-11 01:36:19,937] [main] java.version = 1.8.0_342 [testng] 01:36:19,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:19,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:19,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-11_01-36-19.log] [testng] 01:36:19,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-11 01:36:19,991] [main] testng.directory = /data [testng] [2024-10-11 01:36:19,991] [main] testng.configDirectory = /config [testng] [2024-10-11 01:36:20,003] [main] testng.multiplier = 1.0 [testng] [2024-10-11 01:36:20,003] [main] testng.in-memory = false [testng] [2024-10-11 01:36:20,003] [main] testng.allow-missing = false [testng] [2024-10-11 01:36:20,003] [main] user.language = en [testng] [2024-10-11 01:36:20,003] [main] user.country = ${user.country} [testng] [2024-10-11 01:36:20,003] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-11 01:38:06,378] [main] ---------------------------------------- [testng] [2024-10-11 01:38:06,379] [main] Total files: 4426 [testng] [2024-10-11 01:38:06,379] [main] Scan time: 106.374 s (24 ms/file) [testng] [2024-10-11 01:38:06,379] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-11 02:16:32,397] [pool-1-thread-1] Initializing /data/lzw/Cholinergic.tif: [testng] 02:16:32,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:16:32,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:32,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-11_02-16-32.log] [testng] 02:16:32,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@479a67e1 - End of configuration. [testng] [2024-10-11 02:16:35,118] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 02:16:35,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:16:35,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:35,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-11_02-16-35.log] [testng] 02:16:35,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a7d7fd - End of configuration. [testng] [2024-10-11 02:16:39,199] [pool-1-thread-11] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] 02:16:39,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:16:39,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:39,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-11_02-16-39.log] [testng] 02:16:39,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46b5f054 - End of configuration. [testng] [2024-10-11 02:16:41,728] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z007.tif: [testng] 02:16:41,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:16:41,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:41,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-11_02-16-41.log] [testng] 02:16:41,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43fac85a - End of configuration. [testng] [2024-10-11 02:16:44,146] [pool-1-thread-9] Initializing /data/public/libtiff/jim___cg.tif: [testng] 02:16:44,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:16:44,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:44,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-11_02-16-44.log] [testng] 02:16:44,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43d20f38 - End of configuration. [testng] [2024-10-11 02:16:46,361] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] 02:16:46,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:16:46,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:46,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-11_02-16-46.log] [testng] 02:16:46,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c4bf07b - End of configuration. [testng] [2024-10-11 02:16:48,992] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z035.tif: [testng] 02:16:48,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:16:48,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:48,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-11_02-16-48.log] [testng] 02:16:48,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38878ece - End of configuration. [testng] [2024-10-11 02:16:51,076] [pool-1-thread-6] Initializing /data/josiah/cell-Z27.C0.tiff: [testng] 02:16:51,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:16:51,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:51,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-11_02-16-51.log] [testng] 02:16:51,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b923f72 - End of configuration. [testng] [2024-10-11 02:16:53,106] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z014.tif: [testng] 02:16:53,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:16:53,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:53,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-11_02-16-53.log] [testng] 02:16:53,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f5ad58f - End of configuration. [testng] [2024-10-11 02:16:55,297] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] 02:16:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:16:55,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:55,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-11_02-16-55.log] [testng] 02:16:55,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@204a852f - End of configuration. [testng] [2024-10-11 02:16:57,582] [pool-1-thread-3] Initializing /data/zstd-compressed/yeast.tif: [testng] 02:16:57,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:16:57,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:57,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-11_02-16-57.log] [testng] 02:16:57,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79c1bb47 - End of configuration. [testng] [2024-10-11 02:17:00,353] [pool-1-thread-2] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] 02:17:00,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:17:00,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:00,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-11_02-17-00.log] [testng] 02:17:00,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34a4b32a - End of configuration. [testng] [2024-10-11 02:17:17,856] [pool-1-thread-4] Initializing /data/damian/21m.tiff: [testng] [2024-10-11 02:17:19,805] [pool-1-thread-8] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2024-10-11 02:17:22,017] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-10-11 02:17:24,260] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP3.tiff: [testng] [2024-10-11 02:17:26,309] [pool-1-thread-3] Initializing /data/josiah/cell-Z6.C1.tiff: [testng] [2024-10-11 02:17:29,121] [pool-1-thread-10] Initializing /data/damian/09m.tiff: [testng] [2024-10-11 02:17:31,891] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-10-11 02:17:34,293] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-10-11 02:17:37,374] [pool-1-thread-12] Initializing /data/josiah/cell-Z20.C1.tiff: [testng] [2024-10-11 02:17:40,003] [pool-1-thread-1] Initializing /data/brian/CurrentSystems.tiff: [testng] [2024-10-11 02:17:42,862] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] [2024-10-11 02:17:46,165] [pool-1-thread-11] Initializing /data/misc/mri-new.mov: [testng] [2024-10-11 02:17:51,744] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2024-10-11 02:18:00,438] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-10-11 02:18:03,204] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-10-11 02:18:06,104] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] [2024-10-11 02:18:08,557] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-10-11 02:18:11,065] [pool-1-thread-7] Initializing /data/ascb/14312-p125A colocalization.tif: [testng] [2024-10-11 02:18:13,521] [pool-1-thread-5] Initializing /data/samples/cielab/Ski_TC8-03_sRGB.tif: [testng] [2024-10-11 02:18:15,820] [pool-1-thread-12] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-10-11 02:18:17,616] [pool-1-thread-10] Initializing /data/stephane/001_z01.tif: [testng] [2024-10-11 02:18:18,973] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z019.tif: [testng] [2024-10-11 02:18:21,434] [pool-1-thread-1] Initializing /data/brian/insight.tiff: [testng] [2024-10-11 02:18:24,119] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2024-10-11 02:18:36,154] [pool-1-thread-11] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] [2024-10-11 02:18:38,733] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z018.tif: [testng] [2024-10-11 02:18:40,900] [pool-1-thread-8] Initializing /data/public/libtiff/jello.tif: [testng] [2024-10-11 02:18:42,904] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-10-11 02:18:44,927] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0251.TIF: [testng] [2024-10-11 02:18:47,464] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP1.tiff: [testng] [2024-10-11 02:18:49,738] [pool-1-thread-9] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-10-11 02:18:52,096] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP9.tiff: [testng] [2024-10-11 02:18:53,716] [pool-1-thread-2] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-10-11 02:18:56,271] [pool-1-thread-10] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-10-11 02:18:59,760] [pool-1-thread-5] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-10-11 02:19:01,784] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z007.tif: [testng] [2024-10-11 02:19:13,324] [pool-1-thread-11] Initializing /data/wayne/Rockies-8bit-indexed.tif: [testng] [2024-10-11 02:19:15,995] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z051.tif: [testng] [2024-10-11 02:19:18,252] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x16.tiff: [testng] [2024-10-11 02:19:20,449] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z020.tif: [testng] [2024-10-11 02:19:22,810] [pool-1-thread-7] Initializing /data/josiah/cell-Z28.C1.tiff: [testng] [2024-10-11 02:19:25,582] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-10-11 02:19:29,049] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-10-11 02:19:31,413] [pool-1-thread-4] Initializing /data/julien/Bialic_CellulesNinja.tif: [testng] [2024-10-11 02:19:32,995] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z025.tif: [testng] [2024-10-11 02:19:35,802] [pool-1-thread-1] Initializing /data/ascb/CYT-2_BaintonBoylesPhagocytosisYeastB_4800.tif: [testng] [2024-10-11 02:19:38,640] [pool-1-thread-10] Initializing /data/wayne/MyoblastCells-8bit.tiff: 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02:37:00,005] [pool-1-thread-12] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-10-11 02:37:01,552] [pool-1-thread-2] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-10-11 02:37:04,803] [pool-1-thread-1] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-10-11 02:37:05,613] [pool-1-thread-8] Initializing /data/stephane/Copy of listeria + clathrin1_w3Cy5.tif: [testng] [2024-10-11 02:37:06,800] [pool-1-thread-6] Initializing /data/public/cellprofiler/fruit-fly-cells/POS076.pattern/POS076.pattern: [testng] [2024-10-11 02:37:13,096] [pool-1-thread-3] Initializing /data/josiah/cell-Z12.C1.tiff: [testng] [2024-10-11 02:37:14,470] [pool-1-thread-11] Initializing /data/josiah/cell-Z39.C1.tiff: [testng] [2024-10-11 02:37:15,712] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs011.TIF: [testng] [2024-10-11 02:37:16,702] [pool-1-thread-9] Initializing /data/public/condensation/A6.pattern2.tif: [testng] 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[2024-10-11 02:45:29,016] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0243.TIF: [testng] [2024-10-11 02:45:35,545] [pool-1-thread-8] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-10-11 02:45:37,696] [pool-1-thread-2] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2024-10-11 02:45:39,635] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z008.tif: [testng] [2024-10-11 02:45:41,211] [pool-1-thread-4] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-10-11 02:45:42,312] [pool-1-thread-10] Initializing /data/josiah/cell-Z29.C1.tiff: [testng] [2024-10-11 02:45:42,743] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z012.tif: [testng] [2024-10-11 02:45:43,332] [pool-1-thread-9] Initializing /data/public/condensation/C4.pattern6.tif: [testng] [2024-10-11 02:45:44,224] [pool-1-thread-11] Initializing /data/ascb/bad/FND-21_FawcettPhillipsTransverse_4800.tif: [testng] [2024-10-11 02:45:45,922] [pool-1-thread-6] Initializing 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[2024-10-11 02:46:10,680] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-10-11 02:46:12,636] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-10-11 02:46:21,562] [pool-1-thread-7] Initializing /data/curtis/test1.tiff: [testng] [2024-10-11 02:46:24,144] [pool-1-thread-8] Initializing /data/public/condensation/A1.pattern1.tif: [testng] [2024-10-11 02:46:25,429] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] [2024-10-11 02:46:27,056] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-10-11 02:46:28,578] [pool-1-thread-2] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-10-11 02:46:32,628] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern7.tif: [testng] [2024-10-11 02:46:33,164] [pool-1-thread-12] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-10-11 02:46:34,062] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-10-11 02:46:34,496] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-11 02:46:35,031] [pool-1-thread-4] Initializing /data/public/condensation/C4.pattern7.tif: [testng] [2024-10-11 02:46:35,502] [pool-1-thread-1] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-10-11 02:46:36,293] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-10-11 02:46:40,859] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-10-11 02:46:42,298] [pool-1-thread-5] Initializing /data/public/libtiff/strike.tif: [testng] [2024-10-11 02:46:43,341] [pool-1-thread-6] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-10-11 02:46:44,450] [pool-1-thread-8] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-10-11 02:46:44,961] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z029.tif: [testng] [2024-10-11 02:46:45,748] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z040.tif: [testng] [2024-10-11 02:46:46,287] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs007.TIF: [testng] [2024-10-11 02:46:46,815] [pool-1-thread-1] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-10-11 02:46:47,432] [pool-1-thread-12] Initializing /data/josiah/cell-Z19.C1.tiff: [testng] [2024-10-11 02:46:47,945] [pool-1-thread-10] Initializing /data/josiah/cell-Z8.C0.tiff: [testng] [2024-10-11 02:46:48,426] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2024-10-11 02:46:53,057] [pool-1-thread-7] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] [2024-10-11 02:46:54,054] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-10-11 02:46:55,873] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0238.TIF: [testng] [2024-10-11 02:46:56,602] [pool-1-thread-4] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2024-10-11 02:46:57,248] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0227.TIF: [testng] [2024-10-11 02:46:57,739] [pool-1-thread-12] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-10-11 02:46:58,087] [pool-1-thread-8] Initializing /data/caroline/1828_L2_series_1.tif: [testng] [2024-10-11 02:46:58,857] [pool-1-thread-9] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-10-11 02:46:59,287] [pool-1-thread-3] Initializing /data/josiah/cell-Z8.C1.tiff: [testng] [2024-10-11 02:46:59,857] [pool-1-thread-6] Initializing /data/josiah/cell-Z33.C0.tiff: [testng] [2024-10-11 02:47:00,250] [pool-1-thread-11] Initializing /data/carolyn/tumor_1.tif: [testng] [2024-10-11 02:47:04,139] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0232.TIF: [testng] [2024-10-11 02:47:04,730] [pool-1-thread-5] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-10-11 02:47:06,786] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-10-11 02:47:07,724] [pool-1-thread-8] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-10-11 02:47:08,440] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z018.tif: [testng] [2024-10-11 02:47:08,633] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z034.tif: [testng] [2024-10-11 02:47:09,350] [pool-1-thread-1] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-10-11 02:47:09,543] [pool-1-thread-12] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-10-11 02:47:10,070] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] [2024-10-11 02:47:10,587] [pool-1-thread-6] Initializing /data/glen/6307wmmidb4237m_cmle.tif: [testng] [2024-10-11 02:47:14,393] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z057.tif: [testng] [2024-10-11 02:47:14,998] [pool-1-thread-7] Initializing /data/ascb/FND-11_PorterPaladeEarly_4800.tif: [testng] [2024-10-11 02:47:16,766] [pool-1-thread-3] Initializing /data/sub-resolution/Leica-1/Leica-1-subifds.tiff: [testng] [2024-10-11 02:47:17,455] [pool-1-thread-9] Initializing /data/damian/12m.tiff: [testng] [2024-10-11 02:47:18,526] [pool-1-thread-1] Initializing /data/josiah/cell-Z13.C1.tiff: [testng] [2024-10-11 02:47:19,663] [pool-1-thread-5] Initializing /data/pavel/Dmel/spim.pattern: [testng] [2024-10-11 02:47:31,875] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs015.TIF: [testng] [2024-10-11 02:47:33,035] [pool-1-thread-10] Initializing /data/alexa/test4.tif: [testng] [2024-10-11 02:47:33,842] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips_fourteen.tiff: [testng] [2024-10-11 02:47:34,878] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z056.tif: [testng] [2024-10-11 02:47:35,889] [pool-1-thread-12] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-10-11 02:47:36,558] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-10-11 02:47:38,304] [pool-1-thread-2] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-10-11 02:47:42,493] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-10-11 02:47:44,699] [pool-1-thread-1] Initializing /data/qa-7589/CalGrid2.tif: [testng] [2024-10-11 02:47:46,273] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-10-11 02:47:47,579] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0246.TIF: [testng] [2024-10-11 02:47:48,421] [pool-1-thread-12] Initializing /data/curtis/test4.tiff: [testng] [2024-10-11 02:47:50,646] [pool-1-thread-7] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-10-11 02:47:53,083] [pool-1-thread-4] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-10-11 02:47:54,838] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] [2024-10-11 02:47:57,584] [pool-1-thread-3] Initializing /data/big-images/2kx2k.tif: [testng] [2024-10-11 02:47:58,318] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-10-11 02:47:59,771] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-10-11 02:48:04,860] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-10-11 02:48:06,932] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] [2024-10-11 02:48:08,572] [pool-1-thread-9] Initializing /data/darwinjob/SESSION4_Image2.tif: [testng] [2024-10-11 02:48:09,501] [pool-1-thread-11] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-10-11 02:48:10,469] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z028.tif: [testng] [2024-10-11 02:48:11,183] [pool-1-thread-4] Initializing /data/josiah/cell-Z7.C1.tiff: [testng] [2024-10-11 02:48:12,045] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x48.tiff: [testng] [2024-10-11 02:48:12,539] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-10-11 02:48:14,588] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2024-10-11 02:48:15,679] [pool-1-thread-10] Initializing /data/josiah/cell-Z7.C0.tiff: [testng] [2024-10-11 02:48:17,219] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-10-11 02:48:23,676] [pool-1-thread-1] Initializing /data/curtis/map/the-lazy-dog: [testng] [2024-10-11 02:48:26,329] [pool-1-thread-4] Initializing /data/ascb/CYT-146_Fader_Distribution.tif: [testng] [2024-10-11 02:48:27,679] [pool-1-thread-8] Initializing /data/misc/9 h test.tif: [testng] [2024-10-11 02:48:28,212] [pool-1-thread-12] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-10-11 02:48:30,115] [pool-1-thread-7] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-10-11 02:48:33,283] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-10-11 02:48:34,105] [pool-1-thread-9] Initializing /data/public/condensation/A10.pattern2.tif: [testng] [2024-10-11 02:48:35,521] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-10-11 02:48:36,502] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-10-11 02:48:37,528] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-10-11 02:48:44,997] [pool-1-thread-8] Initializing /data/public/cellprofiler/fruit-fly-cells/POS002.pattern/POS002.pattern: [testng] [2024-10-11 02:48:53,472] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] [2024-10-11 02:48:55,761] [pool-1-thread-11] Initializing /data/sub-resolution/Leica-2/Leica-2-subifds.tiff: [testng] [2024-10-11 02:48:57,254] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs008.TIF: [testng] [2024-10-11 02:48:58,568] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0225.TIF: [testng] [2024-10-11 02:49:00,207] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z024.tif: [testng] [2024-10-11 02:49:01,380] [pool-1-thread-9] Initializing /data/damian/30m.tiff: [testng] [2024-10-11 02:49:02,542] [pool-1-thread-2] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-10-11 02:49:04,112] [pool-1-thread-12] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] [2024-10-11 02:49:11,334] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-10-11 02:49:13,110] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-10-11 02:49:14,398] [pool-1-thread-3] Initializing /data/misc/mri-stack.tif: [testng] [2024-10-11 02:49:16,406] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0240.TIF: [testng] [2024-10-11 02:49:17,639] [pool-1-thread-6] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-10-11 02:49:19,308] [pool-1-thread-9] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-11 02:49:20,640] [pool-1-thread-2] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 73 minutes 47 seconds Finished: SUCCESS