![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2838690508611220222.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35199_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:18,591 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:18,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:22:18,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:18,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:18,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:18,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:18,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:18,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:18,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:18,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:18,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:18,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:18,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:18,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:18,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:18,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:18,777 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:18,777 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:18,777 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:18,777 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:18,778 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:22:18,779 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:22:18,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 01:22:18,787] [main] java.version = 17.0.2 [testng] 01:22:18,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:18,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:18,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_01-22-18.log] [testng] 01:22:18,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 01:22:18,831] [main] testng.directory = /data [testng] [2024-10-16 01:22:18,831] [main] testng.configDirectory = /config [testng] [2024-10-16 01:22:18,839] [main] testng.multiplier = 1.0 [testng] [2024-10-16 01:22:18,840] [main] testng.in-memory = false [testng] [2024-10-16 01:22:18,840] [main] testng.allow-missing = false [testng] [2024-10-16 01:22:18,840] [main] user.language = en [testng] [2024-10-16 01:22:18,840] [main] user.country = ${user.country} [testng] [2024-10-16 01:22:18,840] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 01:23:03,765] [main] ---------------------------------------- [testng] [2024-10-16 01:23:03,765] [main] Total files: 315 [testng] [2024-10-16 01:23:03,765] [main] Scan time: 44.925 s (142 ms/file) [testng] [2024-10-16 01:23:03,766] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 02:30:39,598] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] 02:30:39,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:30:39,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:39,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_02-30-39.log] [testng] 02:30:39,601 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67dbc946 - End of configuration. [testng] [2024-10-16 02:30:45,746] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 02:30:45,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:30:45,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:45,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_02-30-45.log] [testng] 02:30:45,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55479d70 - End of configuration. [testng] [2024-10-16 02:30:55,432] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir: [testng] 02:30:55,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:30:55,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:55,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_02-30-55.log] [testng] 02:30:55,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@363b93d - End of configuration. [testng] [2024-10-16 02:31:01,882] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] 02:31:01,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:31:01,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:01,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_02-31-01.log] [testng] 02:31:01,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff05873 - End of configuration. [testng] [2024-10-16 02:31:08,056] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 02:31:08,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:31:08,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:08,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_02-31-08.log] [testng] 02:31:08,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ffce53 - End of configuration. [testng] [2024-10-16 02:31:24,295] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] 02:31:24,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:31:24,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:24,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_02-31-24.log] [testng] 02:31:24,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67c56a16 - End of configuration. [testng] [2024-10-16 02:31:39,650] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 02:31:39,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:31:39,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:39,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_02-31-39.log] [testng] 02:31:39,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49928bd8 - End of configuration. [testng] [2024-10-16 02:31:45,379] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 02:31:45,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:31:45,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:45,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_02-31-45.log] [testng] 02:31:45,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d7ca38c - End of configuration. [testng] [2024-10-16 02:31:53,090] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] 02:31:53,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:31:53,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:53,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_02-31-53.log] [testng] 02:31:53,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db61a70 - End of configuration. [testng] [2024-10-16 02:32:01,141] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 02:32:01,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:32:01,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:01,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_02-32-01.log] [testng] 02:32:01,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@627dde3e - End of configuration. [testng] [2024-10-16 02:32:11,554] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] 02:32:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:32:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:11,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_02-32-11.log] [testng] 02:32:11,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e06a699 - End of configuration. [testng] [2024-10-16 02:32:18,885] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] 02:32:18,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:32:18,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:18,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_02-32-18.log] [testng] 02:32:18,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edacfa8 - End of configuration. [testng] [2024-10-16 02:33:53,906] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-10-16 02:34:01,195] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-10-16 02:34:18,609] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-10-16 02:34:34,247] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-10-16 02:34:48,004] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-10-16 02:34:54,778] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-10-16 02:35:05,227] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-10-16 02:35:20,946] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-10-16 02:35:36,653] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-10-16 02:36:33,843] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-10-16 02:36:52,927] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-10-16 02:37:00,631] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-10-16 02:37:11,737] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-10-16 02:37:18,846] [pool-1-thread-5] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-10-16 02:37:36,550] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-10-16 02:38:05,183] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-10-16 02:38:17,165] [pool-1-thread-8] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-10-16 02:38:24,558] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-10-16 02:38:30,821] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-10-16 02:39:02,622] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-10-16 02:39:10,568] [pool-1-thread-1] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-10-16 02:39:28,293] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-10-16 02:39:36,310] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-10-16 02:39:43,149] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-10-16 02:39:54,743] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-10-16 02:40:01,305] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-10-16 02:40:07,438] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-10-16 02:40:43,716] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-10-16 02:40:59,836] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-10-16 02:41:10,534] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-10-16 02:41:17,140] [pool-1-thread-1] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-10-16 02:41:17,604] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-10-16 02:41:33,678] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-10-16 02:42:02,124] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-10-16 02:42:30,750] [pool-1-thread-4] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-10-16 02:42:50,680] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-10-16 02:42:57,700] [pool-1-thread-7] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-10-16 02:43:16,291] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-10-16 02:43:36,133] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-10-16 02:44:09,019] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-10-16 02:44:25,871] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-10-16 02:44:44,167] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-10-16 02:44:49,867] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-10-16 02:45:06,806] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-10-16 02:45:22,946] [pool-1-thread-4] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-10-16 02:46:06,808] [pool-1-thread-7] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-10-16 02:46:20,489] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-10-16 02:46:38,221] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-10-16 02:46:45,645] [pool-1-thread-10] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-10-16 02:46:52,802] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-10-16 02:47:03,464] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-10-16 02:47:14,140] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-10-16 02:47:26,177] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-10-16 02:47:33,281] [pool-1-thread-12] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-10-16 02:48:03,293] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-10-16 02:48:29,048] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-10-16 02:48:57,611] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-10-16 02:48:59,566] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-10-16 02:49:12,640] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-10-16 02:49:18,573] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-10-16 02:49:34,083] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-10-16 02:49:55,624] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-10-16 02:50:08,892] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-10-16 02:50:19,656] [pool-1-thread-11] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-10-16 02:50:42,012] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-10-16 02:50:44,869] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-10-16 02:51:19,939] [pool-1-thread-4] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-10-16 02:51:36,234] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-10-16 02:51:44,491] [pool-1-thread-10] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-10-16 02:51:51,452] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-10-16 02:51:57,934] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-10-16 02:52:15,736] [pool-1-thread-12] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-10-16 02:52:25,238] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-10-16 02:52:46,021] [pool-1-thread-11] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-10-16 02:53:13,927] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-10-16 02:53:38,671] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-10-16 02:53:45,566] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-10-16 02:54:03,847] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-10-16 02:54:22,676] [pool-1-thread-8] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-10-16 02:54:29,477] [pool-1-thread-11] Initializing /data/olympus/XYZt.vsi: [testng] [2024-10-16 02:54:35,244] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-10-16 02:55:30,906] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-10-16 02:55:49,623] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-10-16 02:55:59,924] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-10-16 02:56:09,833] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-10-16 02:56:32,880] [pool-1-thread-11] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-10-16 02:57:03,099] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-10-16 02:57:12,502] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: [testng] [2024-10-16 02:57:25,769] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-10-16 02:57:33,353] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-10-16 02:58:04,193] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-10-16 02:58:38,896] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-10-16 02:59:22,366] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-10-16 03:00:04,132] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-10-16 03:00:20,298] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-10-16 03:00:38,968] [pool-1-thread-9] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-10-16 03:01:03,669] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-10-16 03:01:46,619] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-10-16 03:02:01,086] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-10-16 03:02:15,363] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-10-16 03:02:33,892] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-10-16 03:03:19,890] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-10-16 03:03:32,493] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-10-16 03:03:39,978] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-10-16 03:03:53,094] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-10-16 03:04:05,448] [pool-1-thread-8] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-10-16 03:05:49,624] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-10-16 03:06:03,622] [pool-1-thread-3] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-10-16 03:06:10,599] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-10-16 03:06:23,762] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-10-16 03:06:46,596] [pool-1-thread-6] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-10-16 03:07:03,397] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-10-16 03:07:56,789] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-10-16 03:08:33,965] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-10-16 03:08:55,652] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-10-16 03:09:15,799] [pool-1-thread-5] Initializing /data/qa-17919/f10187.oir: [testng] [2024-10-16 03:09:41,334] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-10-16 03:09:54,472] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-10-16 03:11:05,441] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-16 03:11:22,411] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-10-16 03:11:41,586] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-10-16 03:11:54,267] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-10-16 03:12:13,706] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-10-16 03:13:15,572] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-10-16 03:13:23,121] [pool-1-thread-9] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-10-16 03:13:34,863] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-10-16 03:13:44,929] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-10-16 03:14:45,105] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-10-16 03:14:51,812] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-10-16 03:15:17,548] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-10-16 03:15:33,471] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-10-16 03:16:17,998] [pool-1-thread-12] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-16 03:16:24,689] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-10-16 03:16:41,568] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-10-16 03:17:16,192] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-10-16 03:17:40,774] [pool-1-thread-10] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-10-16 03:18:00,295] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: [testng] [2024-10-16 03:18:45,605] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-10-16 03:19:02,034] [pool-1-thread-9] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-10-16 03:19:03,026] [pool-1-thread-10] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-10-16 03:19:14,981] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-10-16 03:19:54,417] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-10-16 03:20:14,928] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-10-16 03:20:42,287] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-10-16 03:20:51,673] [pool-1-thread-7] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-10-16 03:21:14,959] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-10-16 03:21:21,909] [pool-1-thread-12] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-10-16 03:21:32,600] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-10-16 03:22:28,009] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-10-16 03:22:47,100] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] [2024-10-16 03:22:53,155] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-10-16 03:23:05,515] [pool-1-thread-5] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-10-16 03:23:13,913] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-10-16 03:23:38,463] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-10-16 03:24:02,376] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-10-16 03:24:21,595] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-10-16 03:24:34,011] [pool-1-thread-10] Initializing /data/qa-17917/f10010.oir: [testng] [2024-10-16 03:25:07,404] [pool-1-thread-2] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-10-16 03:25:17,549] [pool-1-thread-1] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-10-16 03:25:23,703] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-10-16 03:26:21,181] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-10-16 03:26:54,871] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-10-16 03:27:01,271] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-10-16 03:27:35,735] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-10-16 03:28:05,854] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-10-16 03:28:33,335] [pool-1-thread-7] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-10-16 03:28:58,598] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-10-16 03:29:10,003] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-10-16 03:29:34,939] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-10-16 03:29:46,184] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-10-16 03:29:51,153] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-10-16 03:30:15,995] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-10-16 03:30:29,482] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-10-16 03:30:31,572] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-10-16 03:30:36,041] [pool-1-thread-7] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-10-16 03:30:41,060] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-10-16 03:30:42,935] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-10-16 03:31:25,540] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-10-16 03:31:39,106] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-10-16 03:31:44,346] [pool-1-thread-1] Initializing /data/qa-17335/1.oir: [testng] 04:58:58,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:58:58,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:58:58,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_04-58-58.log] [testng] 04:58:58,104 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3c0f51 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 216 minutes 42 seconds Finished: SUCCESS