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Started by upstream project "BIOFORMATS-test-repo" build number 222 originally caused by: Started by upstream project "Trigger" build number 249 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins11642046236732565232.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35200_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:22:33,208 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:33,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:22:33,210 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:33,211 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:33,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:33,211 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:33,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:33,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:33,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:33,213 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:33,213 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:33,213 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:33,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:33,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:33,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:33,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:33,388 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:33,388 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:33,388 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:33,388 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:33,389 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:22:33,390 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:22:33,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-16 01:22:33,398] [main] java.version = 17.0.2 [testng] 01:22:33,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:33,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:33,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_01-22-33.log] [testng] 01:22:33,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-16 01:22:33,442] [main] testng.directory = /data [testng] [2024-10-16 01:22:33,442] [main] testng.configDirectory = /config [testng] [2024-10-16 01:22:33,450] [main] testng.multiplier = 1.0 [testng] [2024-10-16 01:22:33,451] [main] testng.in-memory = false [testng] [2024-10-16 01:22:33,451] [main] testng.allow-missing = false [testng] [2024-10-16 01:22:33,451] [main] user.language = en [testng] [2024-10-16 01:22:33,451] [main] user.country = ${user.country} [testng] [2024-10-16 01:22:33,451] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-16 01:25:34,891] [main] ---------------------------------------- [testng] [2024-10-16 01:25:34,892] [main] Total files: 4426 [testng] [2024-10-16 01:25:34,892] [main] Scan time: 181.439 s (40 ms/file) [testng] [2024-10-16 01:25:34,892] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-16 03:53:44,742] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 03:53:44,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:53:44,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:44,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-16_03-53-44.log] [testng] 03:53:44,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fd3d8f - End of configuration. [testng] [2024-10-16 03:53:50,815] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 03:53:50,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:53:50,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:50,816 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-16_03-53-50.log] [testng] 03:53:50,816 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d144448 - End of configuration. [testng] [2024-10-16 03:53:57,661] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 03:53:57,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:53:57,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:53:57,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-16_03-53-57.log] [testng] 03:53:57,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ce73149 - End of configuration. [testng] [2024-10-16 03:54:04,808] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 03:54:04,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:54:04,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:04,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-16_03-54-04.log] [testng] 03:54:04,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57426f53 - End of configuration. [testng] [2024-10-16 03:54:11,960] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 03:54:11,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:54:11,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:11,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-16_03-54-11.log] [testng] 03:54:11,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65399f6b - End of configuration. [testng] [2024-10-16 03:54:18,956] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 03:54:18,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:54:18,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:18,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-16_03-54-18.log] [testng] 03:54:18,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79548bee - End of configuration. [testng] [2024-10-16 03:54:25,933] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 03:54:25,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:54:25,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:25,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-16_03-54-25.log] [testng] 03:54:25,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bd9fc94 - End of configuration. [testng] [2024-10-16 03:54:32,979] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 03:54:32,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:54:32,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:32,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-16_03-54-32.log] [testng] 03:54:32,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe6d3bf - End of configuration. [testng] [2024-10-16 03:54:39,979] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 03:54:39,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:54:39,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:39,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-16_03-54-39.log] [testng] 03:54:39,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56761f6e - End of configuration. [testng] [2024-10-16 03:54:45,294] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 03:54:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:54:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:45,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-16_03-54-45.log] [testng] 03:54:45,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3685f1a1 - End of configuration. [testng] [2024-10-16 03:54:48,667] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 03:54:48,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:54:48,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:48,668 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-16_03-54-48.log] [testng] 03:54:48,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25fb04a5 - End of configuration. [testng] [2024-10-16 03:54:54,793] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 03:54:54,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:54:54,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:54:54,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-16_03-54-54.log] [testng] 03:54:54,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@529a1387 - End of configuration. [testng] [2024-10-16 03:55:41,193] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-10-16 03:55:50,106] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-10-16 03:55:55,543] [pool-1-thread-1] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-10-16 03:56:04,238] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-10-16 03:56:11,293] [pool-1-thread-4] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-10-16 03:56:17,126] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-10-16 03:56:22,882] [pool-1-thread-3] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-10-16 03:56:28,603] [pool-1-thread-11] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-10-16 03:57:00,143] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-10-16 03:57:05,934] [pool-1-thread-6] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-10-16 03:57:11,963] [pool-1-thread-12] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-10-16 03:57:17,990] [pool-1-thread-10] Initializing /data/martin/head.tif: [testng] [2024-10-16 03:57:49,512] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-16 03:58:03,193] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-10-16 03:58:08,249] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-10-16 03:58:13,042] [pool-1-thread-10] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-10-16 03:58:17,543] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-10-16 03:58:22,099] [pool-1-thread-5] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-10-16 03:58:26,117] [pool-1-thread-8] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-10-16 03:58:30,179] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-10-16 03:58:34,274] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-10-16 03:58:38,541] [pool-1-thread-2] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-10-16 03:58:58,824] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-10-16 03:59:33,248] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-10-16 03:59:50,895] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-10-16 03:59:56,401] [pool-1-thread-8] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-10-16 04:00:01,836] [pool-1-thread-3] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-10-16 04:00:04,204] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-10-16 04:00:10,050] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-10-16 04:00:17,050] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-10-16 04:00:23,072] [pool-1-thread-5] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-10-16 04:00:27,810] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-10-16 04:00:33,164] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-10-16 04:01:03,295] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-10-16 04:01:16,762] [pool-1-thread-7] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-10-16 04:01:31,910] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-10-16 04:01:37,926] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-10-16 04:01:44,583] [pool-1-thread-12] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-10-16 04:01:51,546] [pool-1-thread-5] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-10-16 04:01:58,969] [pool-1-thread-6] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-10-16 04:02:05,230] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-10-16 04:02:12,483] [pool-1-thread-10] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-10-16 04:02:18,861] [pool-1-thread-1] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-10-16 04:02:53,935] [pool-1-thread-3] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-10-16 04:03:01,816] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-10-16 04:03:11,175] [pool-1-thread-11] Initializing 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/data/josiah/cell-Z16.C1.tiff: [testng] [2024-10-16 06:16:44,256] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-10-16 06:17:38,096] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-10-16 06:17:55,516] [pool-1-thread-2] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-10-16 06:18:06,117] [pool-1-thread-11] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-10-16 06:18:17,686] [pool-1-thread-10] Initializing /data/curtis/map/the-quick: [testng] [2024-10-16 06:18:30,878] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-10-16 06:18:48,081] [pool-1-thread-7] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-10-16 06:19:02,824] [pool-1-thread-5] Initializing /data/damian/12m.tiff: [testng] [2024-10-16 06:19:14,317] [pool-1-thread-4] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] 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[pool-1-thread-9] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-10-16 06:22:05,824] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-10-16 06:22:17,005] [pool-1-thread-10] Initializing /data/edward/TestDoc2.tif: [testng] [2024-10-16 06:22:27,533] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-10-16 06:22:38,160] [pool-1-thread-3] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-10-16 06:22:48,985] [pool-1-thread-11] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-10-16 06:23:04,185] [pool-1-thread-12] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-10-16 06:23:55,733] [pool-1-thread-8] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-10-16 06:24:07,690] [pool-1-thread-2] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-10-16 06:24:41,628] [pool-1-thread-9] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-10-16 06:24:52,214] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-10-16 06:25:03,362] [pool-1-thread-12] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-10-16 06:25:07,045] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-10-16 06:25:18,182] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-10-16 06:25:28,975] [pool-1-thread-5] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-10-16 06:25:39,669] [pool-1-thread-1] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-10-16 06:25:53,215] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-10-16 06:26:03,038] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-10-16 06:26:13,647] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-10-16 06:27:09,592] [pool-1-thread-2] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-10-16 06:27:20,669] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-10-16 06:27:40,707] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-16 06:27:51,461] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-10-16 06:28:03,268] [pool-1-thread-3] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-10-16 06:28:13,124] [pool-1-thread-7] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-10-16 06:28:23,571] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-10-16 06:28:34,837] [pool-1-thread-9] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-10-16 06:28:44,752] [pool-1-thread-1] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-10-16 06:28:55,615] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-10-16 06:29:05,565] [pool-1-thread-11] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-10-16 06:29:18,462] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-10-16 06:30:09,577] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-10-16 06:30:30,769] [pool-1-thread-2] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] 06:31:24,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:31:24,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:31:24,504 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-16_06-31-24.log] [testng] 06:31:24,504 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d1035ec - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 308 minutes 56 seconds Finished: SUCCESS