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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11006180448151072065.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35384_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:23:53,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:23:53,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:23:53,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:53,573 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:23:53,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:23:53,574 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:23:53,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:23:53,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:53,574 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:23:53,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:23:53,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:23:53,575 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:23:53,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:23:53,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:23:53,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:23:53,751 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:23:53,757 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:23:53,757 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:23:53,757 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:23:53,758 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:23:53,758 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:23:53,758 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:23:53,759 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 04:23:53,767] [main] java.version = 21 [testng] 04:23:53,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:23:53,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:23:53,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_04-23-53.log] [testng] 04:23:53,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 04:23:53,813] [main] testng.directory = /data [testng] [2024-10-17 04:23:53,813] [main] testng.configDirectory = /config [testng] [2024-10-17 04:23:53,821] [main] testng.multiplier = 1.0 [testng] [2024-10-17 04:23:53,821] [main] testng.in-memory = false [testng] [2024-10-17 04:23:53,822] [main] testng.allow-missing = false [testng] [2024-10-17 04:23:53,822] [main] user.language = en [testng] [2024-10-17 04:23:53,822] [main] user.country = ${user.country} [testng] [2024-10-17 04:23:53,822] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 04:23:54,461] [main] ---------------------------------------- [testng] [2024-10-17 04:23:54,461] [main] Total files: 25 [testng] [2024-10-17 04:23:54,461] [main] Scan time: 0.639 s (25 ms/file) [testng] [2024-10-17 04:23:54,462] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 04:24:54,963] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] 04:24:54,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:24:54,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:54,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_04-24-54.log] [testng] 04:24:54,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b1f93bc - End of configuration. [testng] [2024-10-17 04:24:56,973] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] 04:24:56,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:24:56,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:56,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_04-24-56.log] [testng] 04:24:56,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c855e1 - End of configuration. [testng] [2024-10-17 04:24:59,110] [pool-1-thread-11] Initializing /data/jqd/mireSixteen.pict: [testng] 04:24:59,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:24:59,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:24:59,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_04-24-59.log] [testng] 04:24:59,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29311de - End of configuration. [testng] [2024-10-17 04:25:00,875] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 04:25:00,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:25:00,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:00,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_04-25-00.log] [testng] 04:25:00,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dedd677 - End of configuration. [testng] [2024-10-17 04:25:02,609] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] 04:25:02,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:25:02,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:02,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_04-25-02.log] [testng] 04:25:02,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0c73f5 - End of configuration. [testng] [2024-10-17 04:25:04,444] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 04:25:04,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:25:04,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:04,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_04-25-04.log] [testng] 04:25:04,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b0710a - End of configuration. [testng] [2024-10-17 04:25:05,626] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] 04:25:05,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:25:05,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:05,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_04-25-05.log] [testng] 04:25:05,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c544086 - End of configuration. [testng] [2024-10-17 04:25:07,797] [pool-1-thread-6] Initializing /data/misc/planet.png: [testng] 04:25:07,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:25:07,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:07,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_04-25-07.log] [testng] 04:25:07,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16df42d7 - End of configuration. [testng] [2024-10-17 04:25:08,090] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 04:25:08,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:25:08,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:08,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_04-25-08.log] [testng] 04:25:08,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c544f1d - End of configuration. [testng] [2024-10-17 04:25:10,615] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] 04:25:10,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:25:10,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:10,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_04-25-10.log] [testng] 04:25:10,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c504651 - End of configuration. [testng] [2024-10-17 04:25:12,175] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 04:25:12,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:25:12,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:12,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_04-25-12.log] [testng] 04:25:12,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db3a58 - End of configuration. [testng] [2024-10-17 04:25:14,012] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 04:25:14,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:25:14,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:25:14,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_04-25-14.log] [testng] 04:25:14,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38bb3d81 - End of configuration. [testng] [2024-10-17 04:25:22,016] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-10-17 04:25:29,888] [pool-1-thread-11] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-10-17 04:25:31,524] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] [2024-10-17 04:25:33,156] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-10-17 04:25:35,232] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] [2024-10-17 04:25:36,793] [pool-1-thread-12] Initializing /data/misc/planet.pict: [testng] [2024-10-17 04:25:38,150] [pool-1-thread-10] Initializing /data/jqd/mire32.pict: [testng] [2024-10-17 04:25:39,369] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-10-17 04:25:41,695] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] [2024-10-17 04:25:44,178] [pool-1-thread-5] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-10-17 04:25:46,683] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-10-17 04:25:48,659] [pool-1-thread-3] Initializing /data/brian/images/VENUS.pct: [testng] [2024-10-17 04:26:00,183] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 23 seconds Finished: SUCCESS