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Started by upstream project "BIOFORMATS-test-repo" build number 223 originally caused by: Started by upstream project "Trigger" build number 250 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7520659723839868296.sh + '[' ariol = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35385_merge_ci -v /uod/idr/repos/curated/ariol:/data -v /uod/idr-scratch/merge-ci/curated/ariol:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:26:19,526 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:26:19,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 04:26:19,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:26:19,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:26:19,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:26:19,530 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:26:19,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:26:19,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:26:19,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:26:19,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:26:19,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:26:19,531 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:26:19,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:26:19,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:26:19,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:26:19,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:26:19,707 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:26:19,707 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:26:19,707 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:26:19,708 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:26:19,708 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 04:26:19,709 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 04:26:19,709 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 179 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 04:26:19,717] [main] java.version = 21 [testng] 04:26:19,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:26:19,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:26:19,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_04-26-19.log] [testng] 04:26:19,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 04:26:19,761] [main] testng.directory = /data [testng] [2024-10-17 04:26:19,761] [main] testng.configDirectory = /config [testng] [2024-10-17 04:26:19,769] [main] testng.multiplier = 1.0 [testng] [2024-10-17 04:26:19,770] [main] testng.in-memory = false [testng] [2024-10-17 04:26:19,770] [main] testng.allow-missing = false [testng] [2024-10-17 04:26:19,770] [main] user.language = en [testng] [2024-10-17 04:26:19,770] [main] user.country = ${user.country} [testng] [2024-10-17 04:26:19,770] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 04:27:23,821] [main] ---------------------------------------- [testng] [2024-10-17 04:27:23,821] [main] Total files: 33 [testng] [2024-10-17 04:27:23,821] [main] Scan time: 64.051 s (1940 ms/file) [testng] [2024-10-17 04:27:23,822] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 26 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 04:28:48,003] [pool-1-thread-1] Initializing /data/karen/E1445030-57F3-4E15-8BF5-763E0F691B0C.jpg: [testng] 04:28:48,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:28:48,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:48,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_04-28-48.log] [testng] 04:28:48,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d9adeec - End of configuration. [testng] [2024-10-17 04:28:49,321] [pool-1-thread-12] Initializing /data/karen/3AF38F06-D489-4DDA-9806-14A3E12FCE7B.jpg: [testng] 04:28:49,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:28:49,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:49,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_04-28-49.log] [testng] 04:28:49,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8ca6252 - End of configuration. [testng] [2024-10-17 04:28:50,658] [pool-1-thread-11] Initializing /data/karen/07AEF934-D3B2-4558-AB51-4BD744DF2DFF.jpg: [testng] 04:28:50,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:28:50,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:50,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_04-28-50.log] [testng] 04:28:50,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22a147ae - End of configuration. [testng] [2024-10-17 04:28:52,066] [pool-1-thread-10] Initializing /data/karen/04CBE9A7-FA1B-4556-9900-6D869E85FFC7.jpg: [testng] 04:28:52,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:28:52,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:52,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_04-28-52.log] [testng] 04:28:52,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@739653ee - End of configuration. [testng] [2024-10-17 04:28:53,584] [pool-1-thread-9] Initializing /data/karen/26D1C9F6-07D0-4D5F-BD3F-1B7ECB1CB011.jpg: [testng] 04:28:53,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:28:53,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:53,585 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_04-28-53.log] [testng] 04:28:53,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@311e386d - End of configuration. [testng] [2024-10-17 04:28:55,139] [pool-1-thread-8] Initializing /data/karen/CBC73B29-94B4-44E8-BFCD-FC7CE4CF8109.jpg: [testng] 04:28:55,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:28:55,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:55,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_04-28-55.log] [testng] 04:28:55,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7687c68c - End of configuration. [testng] [2024-10-17 04:28:56,317] [pool-1-thread-7] Initializing /data/karen/885FB907-C91D-4E8E-87AB-611D8A61402C.jpg: [testng] 04:28:56,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:28:56,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:56,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_04-28-56.log] [testng] 04:28:56,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e5c803f - End of configuration. [testng] [2024-10-17 04:28:57,525] [pool-1-thread-6] Initializing /data/karen/BB1976B8-C06C-4CFC-8C94-7AEF45E3E191.jpg: [testng] 04:28:57,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:28:57,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:57,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_04-28-57.log] [testng] 04:28:57,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2001e1c2 - End of configuration. [testng] [2024-10-17 04:28:58,519] [pool-1-thread-5] Initializing /data/karen/DFCC500D-A2DA-4166-909B-87EA112049A3.jpg: [testng] 04:28:58,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:28:58,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:58,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_04-28-58.log] [testng] 04:28:58,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d320b12 - End of configuration. [testng] [2024-10-17 04:28:59,368] [pool-1-thread-4] Initializing /data/karen/612E1340-B118-425D-9B59-FD7860AA2B8F.jpg: [testng] 04:28:59,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:28:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:28:59,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_04-28-59.log] [testng] 04:28:59,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@682e4520 - End of configuration. [testng] [2024-10-17 04:29:00,804] [pool-1-thread-3] Initializing /data/karen/E8E773C3-C86B-4457-9D2E-2DFB91EF1714.jpg: [testng] 04:29:00,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:29:00,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:00,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_04-29-00.log] [testng] 04:29:00,805 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134e63e2 - End of configuration. [testng] [2024-10-17 04:29:02,237] [pool-1-thread-2] Initializing /data/karen/6F44F067-6003-458E-871B-1F9AE1F7C928.jpg: [testng] 04:29:02,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:29:02,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:29:02,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_04-29-02.log] [testng] 04:29:02,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5581a4a8 - End of configuration. [testng] [2024-10-17 04:29:30,940] [pool-1-thread-11] Initializing /data/karen/025B2189-8F22-49E7-A23A-93FAC9BABE18.jpg: [testng] [2024-10-17 04:29:31,473] [pool-1-thread-3] Initializing /data/karen/9C2E458B-73C5-4D03-84F7-060F83B4D95A.jpg: [testng] [2024-10-17 04:29:32,615] [pool-1-thread-2] Initializing /data/karen/FD96C1D1-ABE6-4478-A673-652AA63435F2.jpg: [testng] [2024-10-17 04:29:33,658] [pool-1-thread-12] Initializing /data/karen/425C6157-4CFF-434F-8CDC-5D10CE65F168.jpg: [testng] [2024-10-17 04:29:34,767] [pool-1-thread-7] Initializing /data/karen/FE241E3F-2DA8-4BA9-99CB-635663EDE04F.jpg: [testng] [2024-10-17 04:29:35,821] [pool-1-thread-6] Initializing /data/karen/C8026BD0-CBB2-4C73-B69F-9E505B47D46D.jpg: [testng] [2024-10-17 04:29:37,141] [pool-1-thread-1] Initializing /data/karen/94227E77-1CEA-4531-BAD7-1B9152596BC1.jpg: [testng] [2024-10-17 04:29:38,711] [pool-1-thread-5] Initializing /data/karen/AEC8E959-A1A7-4FCA-A755-F3D9DA44C118.jpg: [testng] [2024-10-17 04:29:40,274] [pool-1-thread-9] Initializing /data/karen/76336D87-715F-4F65-B069-3D3C548625D5.jpg: [testng] [2024-10-17 04:29:41,065] [pool-1-thread-8] Initializing /data/karen/6FC2A99A-C50C-4DD0-B379-FA5595AFD2D6.jpg: [testng] [2024-10-17 04:29:41,549] [pool-1-thread-4] Initializing /data/karen/6F685C73-2CD1-421E-B85B-FC1FA4F3F155.jpg: [testng] [2024-10-17 04:29:42,195] [pool-1-thread-10] Initializing /data/karen/0017007C-2559-4778-962F-8C4951E89A35.jpg: [testng] [2024-10-17 04:30:11,046] [pool-1-thread-5] Initializing /data/karen/C6492D1B-CEB2-4CBB-B4E8-88B8828E763D.jpg: [testng] [2024-10-17 04:30:12,318] [pool-1-thread-8] Initializing /data/karen/FFB1E060-F4A7-431B-AB93-655CE861D238.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1378, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 20 seconds Finished: SUCCESS