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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13775547117874602820.sh + '[' lim = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35446_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:09:53,577 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:09:53,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 11:09:53,578 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:53,579 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:09:53,579 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:09:53,580 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:09:53,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:09:53,580 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:53,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:09:53,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:09:53,581 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:09:53,582 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:09:53,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:09:53,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:09:53,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:09:53,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:09:53,765 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:09:53,765 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:09:53,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:09:53,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:09:53,766 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 11:09:53,767 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 11:09:53,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 11:09:53,775] [main] java.version = 21 [testng] 11:09:53,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:09:53,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:09:53,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-09-53.log] [testng] 11:09:53,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 11:09:53,821] [main] testng.directory = /data [testng] [2024-10-17 11:09:53,821] [main] testng.configDirectory = /config [testng] [2024-10-17 11:09:53,830] [main] testng.multiplier = 1.0 [testng] [2024-10-17 11:09:53,830] [main] testng.in-memory = false [testng] [2024-10-17 11:09:53,830] [main] testng.allow-missing = false [testng] [2024-10-17 11:09:53,830] [main] user.language = en [testng] [2024-10-17 11:09:53,830] [main] user.country = ${user.country} [testng] [2024-10-17 11:09:53,830] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 11:09:54,377] [main] ---------------------------------------- [testng] [2024-10-17 11:09:54,377] [main] Total files: 21 [testng] [2024-10-17 11:09:54,377] [main] Scan time: 0.547 s (26 ms/file) [testng] [2024-10-17 11:09:54,378] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 11:10:08,797] [pool-1-thread-1] Initializing /data/venu/Kontrolle0009.lim: [testng] 11:10:08,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:10:08,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:08,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-10-08.log] [testng] 11:10:08,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f74a855 - End of configuration. [testng] [2024-10-17 11:10:09,546] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 11:10:09,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:10:09,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:09,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-10-09.log] [testng] 11:10:09,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6647ca85 - End of configuration. [testng] [2024-10-17 11:10:10,249] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] 11:10:10,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:10:10,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:10,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-10-10.log] [testng] 11:10:10,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43948075 - End of configuration. [testng] [2024-10-17 11:10:11,238] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] 11:10:11,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:10:11,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:11,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-10-11.log] [testng] 11:10:11,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21013a6f - End of configuration. [testng] [2024-10-17 11:10:11,852] [pool-1-thread-9] Initializing /data/venu/Kontrolle0013.lim: [testng] 11:10:11,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:10:11,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:11,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-10-11.log] [testng] 11:10:11,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a33754 - End of configuration. [testng] [2024-10-17 11:10:12,219] [pool-1-thread-8] Initializing /data/venu/Kontrolle0012.lim: [testng] 11:10:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:10:12,219 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:12,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-10-12.log] [testng] 11:10:12,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@323935ce - End of configuration. [testng] [2024-10-17 11:10:12,602] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] 11:10:12,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:10:12,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:12,604 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-10-12.log] [testng] 11:10:12,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67824092 - End of configuration. [testng] [2024-10-17 11:10:12,778] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] 11:10:12,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:10:12,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:12,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-10-12.log] [testng] 11:10:12,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ea901f - End of configuration. [testng] [2024-10-17 11:10:13,239] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] 11:10:13,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:10:13,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:13,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-10-13.log] [testng] 11:10:13,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b5ff60 - End of configuration. [testng] [2024-10-17 11:10:13,440] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim: [testng] 11:10:13,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:10:13,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:13,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-10-13.log] [testng] 11:10:13,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@420a4eee - End of configuration. [testng] [2024-10-17 11:10:13,825] [pool-1-thread-3] Initializing /data/venu/Kontrolle0003.lim: [testng] 11:10:13,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:10:13,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:13,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-10-13.log] [testng] 11:10:13,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@281dd3e8 - End of configuration. [testng] [2024-10-17 11:10:14,092] [pool-1-thread-2] Initializing /data/venu/Kontrolle0014.lim: [testng] 11:10:14,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:10:14,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:14,093 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-10-14.log] [testng] 11:10:14,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50413c65 - End of configuration. [testng] [2024-10-17 11:10:25,189] [pool-1-thread-4] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-10-17 11:10:25,701] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-10-17 11:10:26,219] [pool-1-thread-7] Initializing /data/venu/Kontrolle0005.lim: [testng] [2024-10-17 11:10:26,738] [pool-1-thread-10] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-10-17 11:10:27,286] [pool-1-thread-5] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-10-17 11:10:27,813] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-10-17 11:10:28,314] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim: [testng] [2024-10-17 11:10:28,836] [pool-1-thread-2] Initializing /data/venu/Kontrolle0015.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 44 seconds Finished: SUCCESS