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Started by upstream project "BIOFORMATS-test-repo" build number 225 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins7829135978515468215.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35447_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 11:10:00,741 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 11:10:00,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 11:10:00,743 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:10:00,744 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:10:00,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:10:00,744 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:10:00,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:10:00,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:10:00,745 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:10:00,745 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:10:00,746 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:10:00,746 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:10:00,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:10:00,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:10:00,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:10:00,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:10:00,921 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:10:00,921 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:10:00,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:10:00,922 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:10:00,922 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 11:10:00,922 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 11:10:00,923 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-17 11:10:00,931] [main] java.version = 21 [testng] 11:10:00,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:10:00,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:00,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-17_11-10-00.log] [testng] 11:10:00,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-17 11:10:00,977] [main] testng.directory = /data [testng] [2024-10-17 11:10:00,977] [main] testng.configDirectory = /config [testng] [2024-10-17 11:10:00,985] [main] testng.multiplier = 1.0 [testng] [2024-10-17 11:10:00,985] [main] testng.in-memory = false [testng] [2024-10-17 11:10:00,985] [main] testng.allow-missing = false [testng] [2024-10-17 11:10:00,985] [main] user.language = en [testng] [2024-10-17 11:10:00,985] [main] user.country = ${user.country} [testng] [2024-10-17 11:10:00,985] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-17 11:10:46,408] [main] ---------------------------------------- [testng] [2024-10-17 11:10:46,409] [main] Total files: 21 [testng] [2024-10-17 11:10:46,409] [main] Scan time: 45.422 s (2162 ms/file) [testng] [2024-10-17 11:10:46,409] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-17 11:12:20,507] [pool-1-thread-1] Initializing /data/stefan/001_q09.txt: [testng] 11:12:20,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 11:12:20,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:20,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-17_11-12-20.log] [testng] 11:12:20,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60107668 - End of configuration. [testng] [2024-10-17 11:12:36,986] [pool-1-thread-12] Initializing /data/stefan/001_q14.txt: [testng] 11:12:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:12:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:36,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-17_11-12-36.log] [testng] 11:12:36,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@703fe27b - End of configuration. [testng] [2024-10-17 11:12:46,398] [pool-1-thread-11] Initializing /data/stefan/001_q12.txt: [testng] 11:12:46,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 11:12:46,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:12:46,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-17_11-12-46.log] [testng] 11:12:46,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a8d6f7d - End of configuration. [testng] [2024-10-17 11:13:08,698] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 11:13:08,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 11:13:08,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:13:08,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-17_11-13-08.log] [testng] 11:13:08,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75bf3eb3 - End of configuration. [testng] [2024-10-17 11:13:58,166] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt: [testng] 11:13:58,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:13:58,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:13:58,167 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-17_11-13-58.log] [testng] 11:13:58,168 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b92d1ff - End of configuration. [testng] [2024-10-17 11:14:17,057] [pool-1-thread-8] Initializing /data/stefan/001_q06.txt: [testng] 11:14:17,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 11:14:17,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:17,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-17_11-14-17.log] [testng] 11:14:17,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506768fc - End of configuration. [testng] [2024-10-17 11:14:26,154] [pool-1-thread-7] Initializing /data/stefan/001_q18.txt: [testng] 11:14:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 11:14:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:26,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-17_11-14-26.log] [testng] 11:14:26,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64f047f8 - End of configuration. [testng] [2024-10-17 11:14:34,054] [pool-1-thread-6] Initializing /data/stefan/001_q04.txt: [testng] 11:14:34,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 11:14:34,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:34,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-17_11-14-34.log] [testng] 11:14:34,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e508e81 - End of configuration. [testng] [2024-10-17 11:14:39,140] [pool-1-thread-5] Initializing /data/stefan/001_q05.txt: [testng] 11:14:39,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 11:14:39,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:39,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-17_11-14-39.log] [testng] 11:14:39,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dddaf05 - End of configuration. [testng] [2024-10-17 11:14:45,513] [pool-1-thread-4] Initializing /data/stefan/001_q03.txt: [testng] 11:14:45,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:14:45,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:45,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-17_11-14-45.log] [testng] 11:14:45,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1efbc522 - End of configuration. [testng] [2024-10-17 11:14:49,884] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt: [testng] 11:14:49,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 11:14:49,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:49,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-17_11-14-49.log] [testng] 11:14:49,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188e824d - End of configuration. [testng] [2024-10-17 11:14:54,668] [pool-1-thread-2] Initializing /data/stefan/001_q08.txt: [testng] 11:14:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 11:14:54,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:14:54,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-17_11-14-54.log] [testng] 11:14:54,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b40700f - End of configuration. [testng] [2024-10-17 11:16:22,256] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] [2024-10-17 11:16:26,866] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt: [testng] [2024-10-17 11:16:29,753] [pool-1-thread-6] Initializing /data/stefan/001_q01.txt: [testng] [2024-10-17 11:16:32,471] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] [2024-10-17 11:16:37,719] [pool-1-thread-7] Initializing /data/stefan/001_q15.txt: [testng] [2024-10-17 11:16:45,236] [pool-1-thread-12] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 7 seconds Finished: SUCCESS