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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8961452574561515990.sh + '[' bigtiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35586_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:38:59,851 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:38:59,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:38:59,853 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:38:59,854 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:38:59,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:38:59,854 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:38:59,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:38:59,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:38:59,855 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:38:59,855 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:38:59,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:38:59,856 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:39:00,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:39:00,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:39:00,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:39:00,103 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:39:00,111 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:39:00,111 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:39:00,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:39:00,111 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:39:00,111 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:39:00,112 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:39:00,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 257 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 09:39:00,122] [main] java.version = 1.8.0_342 [testng] 09:39:00,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:39:00,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:39:00,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_09-39-00.log] [testng] 09:39:00,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 09:39:00,172] [main] testng.directory = /data [testng] [2024-10-18 09:39:00,172] [main] testng.configDirectory = /config [testng] [2024-10-18 09:39:00,184] [main] testng.multiplier = 1.0 [testng] [2024-10-18 09:39:00,184] [main] testng.in-memory = false [testng] [2024-10-18 09:39:00,184] [main] testng.allow-missing = false [testng] [2024-10-18 09:39:00,185] [main] user.language = en [testng] [2024-10-18 09:39:00,185] [main] user.country = ${user.country} [testng] [2024-10-18 09:39:00,185] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 09:39:07,029] [main] ---------------------------------------- [testng] [2024-10-18 09:39:07,029] [main] Total files: 14 [testng] [2024-10-18 09:39:07,029] [main] Scan time: 6.844 s (488 ms/file) [testng] [2024-10-18 09:39:07,029] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 09:40:55,114] [pool-1-thread-1] Initializing /data/samples/BigTIFF.tif: [testng] 09:40:55,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:40:55,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:55,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_09-40-55.log] [testng] 09:40:55,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26988eed - End of configuration. [testng] [2024-10-18 09:41:00,717] [pool-1-thread-12] Initializing /data/samples/BigTIFFLong.tif: [testng] 09:41:00,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:41:00,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:00,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_09-41-00.log] [testng] 09:41:00,719 |-INFO in ch.qos.logback.core.sift.SiftProcessor@425921c5 - End of configuration. [testng] [2024-10-18 09:41:06,529] [pool-1-thread-11] Initializing /data/colin/7S59P8I1_F00000012.btf: [testng] 09:41:06,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:41:06,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:06,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_09-41-06.log] [testng] 09:41:06,530 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b680b24 - End of configuration. [testng] [2024-10-18 09:41:13,635] [pool-1-thread-10] Initializing /data/samples/BigTIFFMotorola.tif: [testng] 09:41:13,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:41:13,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:13,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_09-41-13.log] [testng] 09:41:13,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c42a3a3 - End of configuration. [testng] [2024-10-18 09:41:19,385] [pool-1-thread-9] Initializing /data/samples/BigTIFFSubIFD4.tif: [testng] 09:41:19,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:41:19,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:19,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_09-41-19.log] [testng] 09:41:19,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@359d6790 - End of configuration. [testng] [2024-10-18 09:41:25,264] [pool-1-thread-8] Initializing /data/carlsen/Olympics8.tif: [testng] 09:41:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:41:25,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:25,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_09-41-25.log] [testng] 09:41:25,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ed42dc - End of configuration. [testng] [2024-10-18 09:41:31,004] [pool-1-thread-7] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif: [testng] 09:41:31,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:41:31,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:31,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_09-41-31.log] [testng] 09:41:31,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d0163d4 - End of configuration. [testng] [2024-10-18 09:41:36,693] [pool-1-thread-6] Initializing /data/carlsen/Olympics8-raw.tif: [testng] 09:41:36,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:41:36,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:36,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_09-41-36.log] [testng] 09:41:36,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e711d35 - End of configuration. [testng] [2024-10-18 09:41:43,281] [pool-1-thread-5] Initializing /data/carlsen/Olympics8-lzw.tif: [testng] 09:41:43,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:41:43,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:43,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_09-41-43.log] [testng] 09:41:43,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d84482b - End of configuration. [testng] [2024-10-18 09:41:49,057] [pool-1-thread-4] Initializing /data/samples/BigTIFFLong8Tiles.tif: [testng] 09:41:49,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:41:49,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:49,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_09-41-49.log] [testng] 09:41:49,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@748aa6c8 - End of configuration. [testng] [2024-10-18 09:41:54,842] [pool-1-thread-3] Initializing /data/samples/Classic.tif: [testng] 09:41:54,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:41:54,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:41:54,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_09-41-54.log] [testng] 09:41:54,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ffb14e6 - End of configuration. [testng] [2024-10-18 09:42:00,338] [pool-1-thread-2] Initializing /data/samples/BigTIFFSubIFD8.tif: [testng] 09:42:00,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:42:00,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:42:00,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_09-42-00.log] [testng] 09:42:00,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@105919f3 - End of configuration. [testng] [2024-10-18 09:42:48,142] [pool-1-thread-9] Initializing /data/samples/BigTIFFLong8.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 23 seconds Finished: SUCCESS