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Started by upstream project "BIOFORMATS-test-repo" build number 227 originally caused by: Started by upstream project "Trigger" build number 252 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5817700329304306287.sh + '[' canon = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35587_merge_ci -v /uod/idr/repos/curated/canon:/data -v /uod/idr-scratch/merge-ci/curated/canon:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:43:22,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:43:22,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 09:43:22,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:43:22,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:43:22,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:43:22,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:43:22,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:43:22,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:43:22,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:43:22,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:43:22,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:43:22,409 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:43:22,409 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:43:22,409 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:43:22,410 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:43:22,410 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 09:43:22,410 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 09:43:22,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 264 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-18 09:43:22,420] [main] java.version = 1.8.0_342 [testng] 09:43:22,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:43:22,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:22,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-18_09-43-22.log] [testng] 09:43:22,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-18 09:43:22,479] [main] testng.directory = /data [testng] [2024-10-18 09:43:22,480] [main] testng.configDirectory = /config [testng] [2024-10-18 09:43:22,492] [main] testng.multiplier = 1.0 [testng] [2024-10-18 09:43:22,492] [main] testng.in-memory = false [testng] [2024-10-18 09:43:22,492] [main] testng.allow-missing = false [testng] [2024-10-18 09:43:22,492] [main] user.language = en [testng] [2024-10-18 09:43:22,492] [main] user.country = ${user.country} [testng] [2024-10-18 09:43:22,492] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-18 09:44:09,038] [main] ---------------------------------------- [testng] [2024-10-18 09:44:09,038] [main] Total files: 13 [testng] [2024-10-18 09:44:09,039] [main] Scan time: 46.546 s (3580 ms/file) [testng] [2024-10-18 09:44:09,039] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-18 09:45:07,902] [pool-1-thread-1] Initializing /data/cls/_N5Y0001.CR2: [testng] 09:45:07,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:45:07,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:07,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-18_09-45-07.log] [testng] 09:45:07,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7513080c - End of configuration. [testng] [2024-10-18 09:45:12,759] [pool-1-thread-12] Initializing /data/pete/DNG-CRW.CRW: [testng] 09:45:12,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:45:12,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:12,760 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-18_09-45-12.log] [testng] 09:45:12,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@93d5bee - End of configuration. [testng] [2024-10-18 09:45:16,163] [pool-1-thread-11] Initializing /data/pete/DNG-THM.THM: [testng] 09:45:16,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:45:16,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:16,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-18_09-45-16.log] [testng] 09:45:16,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33e16ce8 - End of configuration. [testng] [2024-10-18 09:45:19,686] [pool-1-thread-10] Initializing /data/pete/Raw-THM.THM: [testng] 09:45:19,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:45:19,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:19,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-18_09-45-19.log] [testng] 09:45:19,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1014c05d - End of configuration. [testng] [2024-10-18 09:45:25,533] [pool-1-thread-9] Initializing /data/pete/Raw-CRW.CRW: [testng] 09:45:25,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:45:25,533 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:25,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-18_09-45-25.log] [testng] 09:45:25,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f48492e - End of configuration. [testng] [2024-10-18 09:45:31,327] [pool-1-thread-8] Initializing /data/kinor/2013_03_08_0808.CR2: [testng] 09:45:31,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:45:31,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:31,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-18_09-45-31.log] [testng] 09:45:31,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eded98f - End of configuration. [testng] [2024-10-18 09:45:35,686] [pool-1-thread-7] Initializing /data/pete/DNG-WAV.WAV: [testng] 09:45:35,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:45:35,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:35,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-18_09-45-35.log] [testng] 09:45:35,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ddad36 - End of configuration. [testng] [2024-10-18 09:45:39,208] [pool-1-thread-6] Initializing /data/pete/Learning to Fly.JPG: [testng] 09:45:39,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:45:39,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:39,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-18_09-45-39.log] [testng] 09:45:39,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ece3ec1 - End of configuration. [testng] [2024-10-18 09:45:40,147] [pool-1-thread-5] Initializing /data/pete/Raw-JPG.JPG: [testng] 09:45:40,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:45:40,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:40,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-18_09-45-40.log] [testng] 09:45:40,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394011ed - End of configuration. [testng] [2024-10-18 09:45:45,979] [pool-1-thread-4] Initializing /data/pete/DNG-JPG.JPG: [testng] 09:45:45,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:45:45,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:45,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-18_09-45-45.log] [testng] 09:45:45,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6298faf8 - End of configuration. [testng] [2024-10-18 09:45:49,339] [pool-1-thread-3] Initializing /data/pete/DNG-CR2.CR2: [testng] 09:45:49,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:45:49,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:49,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-18_09-45-49.log] [testng] 09:45:49,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29318664 - End of configuration. [testng] [2024-10-18 09:45:52,593] [pool-1-thread-2] Initializing /data/pete/Raw-CR2.CR2: [testng] 09:45:52,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:45:52,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:52,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-18_09-45-52.log] [testng] 09:45:52,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52061576 - End of configuration. [testng] [2024-10-18 09:46:20,315] [pool-1-thread-6] Initializing /data/pete/Raw-WAV.WAV: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 47 seconds Finished: SUCCESS