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Started by upstream project "BIOFORMATS-test-repo" build number 232 originally caused by: Started by upstream project "Trigger" build number 257 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9484284808262712654.sh + '[' fei = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36392_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:36:04,901 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:36:04,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:36:04,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:04,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:36:04,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:36:04,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:36:04,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:36:04,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:04,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:36:04,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:36:04,905 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:36:04,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:36:05,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:36:05,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:36:05,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:36:05,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:36:05,097 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:36:05,097 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:36:05,098 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:36:05,098 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:36:05,098 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:36:05,099 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:36:05,099 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-23 01:36:05,108] [main] java.version = 17.0.2 [testng] 01:36:05,111 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:36:05,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:05,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-23_01-36-05.log] [testng] 01:36:05,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-23 01:36:05,159] [main] testng.directory = /data [testng] [2024-10-23 01:36:05,159] [main] testng.configDirectory = /config [testng] [2024-10-23 01:36:05,168] [main] testng.multiplier = 1.0 [testng] [2024-10-23 01:36:05,168] [main] testng.in-memory = false [testng] [2024-10-23 01:36:05,169] [main] testng.allow-missing = false [testng] [2024-10-23 01:36:05,169] [main] user.language = en [testng] [2024-10-23 01:36:05,169] [main] user.country = ${user.country} [testng] [2024-10-23 01:36:05,169] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-23 01:36:10,200] [main] ---------------------------------------- [testng] [2024-10-23 01:36:10,200] [main] Total files: 21 [testng] [2024-10-23 01:36:10,200] [main] Scan time: 5.031 s (239 ms/file) [testng] [2024-10-23 01:36:10,200] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-23 01:36:24,761] [pool-1-thread-1] Initializing /data/venu/VENU01.IMG: [testng] 01:36:24,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:36:24,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:24,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-23_01-36-24.log] [testng] 01:36:24,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d67723d - End of configuration. [testng] [2024-10-23 01:36:24,855] [pool-1-thread-12] Initializing /data/venu/VENU_Eight.TIF: [testng] 01:36:24,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:36:24,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:24,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-23_01-36-24.log] [testng] 01:36:24,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d4dc4b1 - End of configuration. [testng] [2024-10-23 01:36:25,197] [pool-1-thread-11] Initializing /data/venu/VENU02.TIF: [testng] 01:36:25,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:36:25,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:25,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-23_01-36-25.log] [testng] 01:36:25,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3e97fb - End of configuration. [testng] [2024-10-23 01:36:25,517] [pool-1-thread-10] Initializing /data/venu/VENU01.TIF: [testng] 01:36:25,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:36:25,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:25,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-23_01-36-25.log] [testng] 01:36:25,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66468bd5 - End of configuration. [testng] [2024-10-23 01:36:26,078] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif: [testng] 01:36:26,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:36:26,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:26,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-23_01-36-26.log] [testng] 01:36:26,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f5154c7 - End of configuration. [testng] [2024-10-23 01:36:26,592] [pool-1-thread-8] Initializing /data/venu/VENU03.IMG: [testng] 01:36:26,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:36:26,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:26,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-23_01-36-26.log] [testng] 01:36:26,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629e532e - End of configuration. [testng] [2024-10-23 01:36:26,789] [pool-1-thread-7] Initializing /data/venu/VENU03.TIF: [testng] 01:36:26,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:36:26,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:26,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-23_01-36-26.log] [testng] 01:36:26,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c294f13 - End of configuration. [testng] [2024-10-23 01:36:27,263] [pool-1-thread-6] Initializing /data/antoine/Tile_001-002-000_0-000.tif: [testng] 01:36:27,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:36:27,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:27,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-23_01-36-27.log] [testng] 01:36:27,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@289d7cf3 - End of configuration. [testng] [2024-10-23 01:36:27,832] [pool-1-thread-5] Initializing /data/venu/VENU_Seven.TIF: [testng] 01:36:27,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:36:27,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:27,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-23_01-36-27.log] [testng] 01:36:27,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21ccea5c - End of configuration. [testng] [2024-10-23 01:36:28,455] [pool-1-thread-4] Initializing /data/venu/VENU.TIF: [testng] 01:36:28,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:36:28,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:28,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-23_01-36-28.log] [testng] 01:36:28,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19d4f750 - End of configuration. [testng] [2024-10-23 01:36:29,099] [pool-1-thread-3] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif: [testng] 01:36:29,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:36:29,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:29,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-23_01-36-29.log] [testng] 01:36:29,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705f6199 - End of configuration. [testng] [2024-10-23 01:36:29,686] [pool-1-thread-2] Initializing /data/steffen/Batman_008.tif: [testng] 01:36:29,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:36:29,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:36:29,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-23_01-36-29.log] [testng] 01:36:29,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e8ef147 - End of configuration. [testng] [2024-10-23 01:36:33,156] [pool-1-thread-1] Initializing /data/venu/VENU_Five.TIF: [testng] [2024-10-23 01:36:33,934] [pool-1-thread-8] Initializing /data/venu/VENU_Six.TIF: [testng] [2024-10-23 01:36:36,160] [pool-1-thread-9] Initializing /data/qa-11061/Tile_020-009-000_0.tif: [testng] [2024-10-23 01:36:36,710] [pool-1-thread-11] Initializing /data/venu/VENU02.IMG: [testng] [2024-10-23 01:36:36,981] [pool-1-thread-7] Initializing /data/venu/VENU_Four.TIF: [testng] [2024-10-23 01:36:37,864] [pool-1-thread-10] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 42 seconds Finished: SUCCESS