![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins5303721180313448213.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37031_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:42,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:42,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:21:42,714 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:42,715 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:42,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:42,715 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:42,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:42,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:42,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:42,717 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:42,717 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:42,718 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:42,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:42,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:42,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:42,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:42,918 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:42,918 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:42,918 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:42,919 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:42,919 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:21:42,919 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:21:42,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 01:21:42,929] [main] java.version = 17.0.2 [testng] 01:21:42,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:42,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:42,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_01-21-42.log] [testng] 01:21:42,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 01:21:42,979] [main] testng.directory = /data [testng] [2024-10-27 01:21:42,979] [main] testng.configDirectory = /config [testng] [2024-10-27 01:21:42,987] [main] testng.multiplier = 1.0 [testng] [2024-10-27 01:21:42,988] [main] testng.in-memory = false [testng] [2024-10-27 01:21:42,988] [main] testng.allow-missing = false [testng] [2024-10-27 01:21:42,988] [main] user.language = en [testng] [2024-10-27 01:21:42,989] [main] user.country = ${user.country} [testng] [2024-10-27 01:21:42,989] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 01:22:11,171] [main] ---------------------------------------- [testng] [2024-10-27 01:22:11,171] [main] Total files: 315 [testng] [2024-10-27 01:22:11,171] [main] Scan time: 28.182 s (89 ms/file) [testng] [2024-10-27 01:22:11,171] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 01:32:28,355] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] 01:32:28,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:28,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:28,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_01-32-28.log] [testng] 01:32:28,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67dbc946 - End of configuration. [testng] [2024-10-27 01:32:28,581] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 01:32:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:28,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:28,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_01-32-28.log] [testng] 01:32:28,582 |-INFO in ch.qos.logback.core.sift.SiftProcessor@363b93d - End of configuration. [testng] [2024-10-27 01:32:28,801] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir: [testng] 01:32:28,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:28,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:28,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_01-32-28.log] [testng] 01:32:28,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5db63935 - End of configuration. [testng] [2024-10-27 01:32:29,268] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] 01:32:29,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:29,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_01-32-29.log] [testng] 01:32:29,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ff05873 - End of configuration. [testng] [2024-10-27 01:32:29,510] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 01:32:29,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:29,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_01-32-29.log] [testng] 01:32:29,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ffce53 - End of configuration. [testng] [2024-10-27 01:32:29,853] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] 01:32:29,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:29,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:29,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_01-32-29.log] [testng] 01:32:29,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ef81f7 - End of configuration. [testng] [2024-10-27 01:32:30,132] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 01:32:30,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:30,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_01-32-30.log] [testng] 01:32:30,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14946669 - End of configuration. [testng] [2024-10-27 01:32:30,395] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 01:32:30,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:30,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_01-32-30.log] [testng] 01:32:30,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36a1886f - End of configuration. [testng] [2024-10-27 01:32:30,622] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] 01:32:30,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:32:30,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,623 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_01-32-30.log] [testng] 01:32:30,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7db61a70 - End of configuration. [testng] [2024-10-27 01:32:30,868] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 01:32:30,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:32:30,868 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:30,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_01-32-30.log] [testng] 01:32:30,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@627dde3e - End of configuration. [testng] [2024-10-27 01:32:31,056] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] 01:32:31,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:32:31,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:31,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_01-32-31.log] [testng] 01:32:31,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e06a699 - End of configuration. [testng] [2024-10-27 01:32:31,322] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] 01:32:31,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:32:31,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:31,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_01-32-31.log] [testng] 01:32:31,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6edacfa8 - End of configuration. [testng] [2024-10-27 01:32:57,460] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-10-27 01:32:57,607] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-10-27 01:32:58,377] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-10-27 01:32:58,717] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-10-27 01:32:59,010] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-10-27 01:32:59,279] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-10-27 01:32:59,489] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-10-27 01:32:59,756] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-10-27 01:32:59,982] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-10-27 01:33:02,423] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-10-27 01:33:03,015] [pool-1-thread-6] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-10-27 01:33:03,944] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-10-27 01:33:04,851] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-10-27 01:33:05,263] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-10-27 01:33:05,591] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-10-27 01:33:06,277] [pool-1-thread-5] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-10-27 01:33:07,309] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-10-27 01:33:07,882] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-10-27 01:33:08,320] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-10-27 01:33:09,651] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-10-27 01:33:10,995] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-10-27 01:33:12,120] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-10-27 01:33:12,485] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-10-27 01:33:12,807] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-10-27 01:33:13,132] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-10-27 01:33:13,948] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-10-27 01:33:14,371] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-10-27 01:33:14,855] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-10-27 01:33:16,736] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-10-27 01:33:17,666] [pool-1-thread-4] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-10-27 01:33:18,123] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-10-27 01:33:19,004] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-10-27 01:33:19,059] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-10-27 01:33:20,962] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-10-27 01:33:22,604] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-10-27 01:33:23,050] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-10-27 01:33:23,464] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-10-27 01:33:23,960] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-10-27 01:33:24,431] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-10-27 01:33:26,677] [pool-1-thread-9] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-10-27 01:33:27,697] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-10-27 01:33:28,138] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-10-27 01:33:28,911] [pool-1-thread-4] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-10-27 01:33:29,945] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-10-27 01:33:31,626] [pool-1-thread-3] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-10-27 01:33:32,342] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-10-27 01:33:32,848] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-10-27 01:33:36,228] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-10-27 01:33:37,297] [pool-1-thread-9] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-10-27 01:33:38,787] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-10-27 01:33:39,341] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-10-27 01:33:39,931] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-10-27 01:33:40,332] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-10-27 01:33:40,715] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-10-27 01:33:41,393] [pool-1-thread-8] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-10-27 01:33:43,787] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-10-27 01:33:45,529] [pool-1-thread-3] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-10-27 01:33:46,083] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-10-27 01:33:47,265] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-10-27 01:33:48,724] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-10-27 01:33:49,574] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-10-27 01:33:50,260] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-10-27 01:33:50,767] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-10-27 01:33:52,000] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-10-27 01:33:53,672] [pool-1-thread-7] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-10-27 01:33:54,847] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-10-27 01:33:56,672] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-10-27 01:33:57,315] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-10-27 01:33:57,708] [pool-1-thread-4] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-10-27 01:33:58,172] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-10-27 01:33:58,934] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-10-27 01:33:59,804] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-10-27 01:34:01,422] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-10-27 01:34:02,124] [pool-1-thread-12] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-10-27 01:34:05,959] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-10-27 01:34:07,802] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-10-27 01:34:08,807] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-10-27 01:34:09,497] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-10-27 01:34:10,546] [pool-1-thread-12] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-10-27 01:34:11,310] [pool-1-thread-6] Initializing /data/olympus/XYZt.vsi: [testng] [2024-10-27 01:34:11,778] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-10-27 01:34:13,060] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-10-27 01:34:18,878] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-10-27 01:34:21,157] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-10-27 01:34:22,570] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-10-27 01:34:23,918] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-10-27 01:34:24,532] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-10-27 01:34:25,924] [pool-1-thread-3] Initializing /data/qa-17270/image1.oir: [testng] [2024-10-27 01:34:27,003] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-10-27 01:34:28,292] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-10-27 01:34:31,091] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-10-27 01:34:35,773] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-10-27 01:34:38,208] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-10-27 01:34:39,773] [pool-1-thread-1] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-10-27 01:34:40,567] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-10-27 01:34:43,057] [pool-1-thread-6] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-10-27 01:34:44,401] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-10-27 01:34:45,718] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-10-27 01:34:48,145] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-10-27 01:34:48,937] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-10-27 01:34:49,854] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-10-27 01:34:53,640] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-10-27 01:34:55,868] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-10-27 01:34:56,521] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-10-27 01:34:57,265] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-10-27 01:34:57,994] [pool-1-thread-1] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-10-27 01:35:52,812] [pool-1-thread-8] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-10-27 01:35:53,294] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-10-27 01:35:55,898] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-10-27 01:35:56,446] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-10-27 01:35:59,196] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-10-27 01:36:00,294] [pool-1-thread-9] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-10-27 01:36:01,158] [pool-1-thread-12] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-10-27 01:36:02,883] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-10-27 01:36:04,913] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-10-27 01:36:05,918] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-10-27 01:36:07,405] [pool-1-thread-9] Initializing /data/qa-17919/f10187.oir: [testng] [2024-10-27 01:36:28,768] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-10-27 01:36:30,388] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-27 01:36:31,538] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-10-27 01:36:33,206] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-10-27 01:36:34,507] [pool-1-thread-12] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-10-27 01:36:37,660] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-10-27 01:36:38,507] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-10-27 01:36:42,449] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-10-27 01:36:42,949] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-10-27 01:36:44,711] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-10-27 01:36:47,276] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-10-27 01:36:48,204] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-10-27 01:36:48,710] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-10-27 01:36:50,032] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-10-27 01:36:52,340] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-10-27 01:36:53,815] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-10-27 01:36:54,533] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-10-27 01:36:56,592] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-10-27 01:36:58,758] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-10-27 01:37:01,861] [pool-1-thread-3] Initializing /data/qa-17270/stack1.oir: [testng] [2024-10-27 01:37:03,569] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-10-27 01:37:05,026] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-10-27 01:37:05,493] [pool-1-thread-12] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-10-27 01:37:10,577] [pool-1-thread-8] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-10-27 01:37:10,983] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-10-27 01:37:11,498] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-10-27 01:37:11,956] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-10-27 01:37:14,794] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-10-27 01:37:15,487] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-10-27 01:37:16,415] [pool-1-thread-12] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-10-27 01:37:23,860] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-10-27 01:37:25,476] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-10-27 01:37:26,164] [pool-1-thread-6] Initializing /data/olympus/XYZt.oir: [testng] [2024-10-27 01:37:27,862] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-10-27 01:37:28,241] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-10-27 01:37:32,946] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-10-27 01:37:34,400] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-10-27 01:37:35,101] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-10-27 01:37:39,844] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-10-27 01:37:43,927] [pool-1-thread-2] Initializing /data/qa-17917/f10010.oir: [testng] [2024-10-27 01:38:17,188] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-10-27 01:38:18,731] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-10-27 01:38:22,383] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-10-27 01:38:26,183] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-10-27 01:38:29,621] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-10-27 01:38:31,418] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-10-27 01:38:32,881] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-10-27 01:38:36,344] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-10-27 01:38:37,747] [pool-1-thread-12] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-10-27 01:38:40,459] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-10-27 01:38:44,145] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-10-27 01:38:45,306] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-10-27 01:38:49,809] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-10-27 01:38:50,347] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-10-27 01:38:54,200] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-10-27 01:38:54,902] [pool-1-thread-12] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-10-27 01:38:55,718] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-10-27 01:39:02,514] [pool-1-thread-4] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-10-27 01:39:05,168] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-10-27 01:39:07,522] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-10-27 01:39:16,303] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-10-27 01:39:17,573] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-10-27 01:39:21,122] [pool-1-thread-3] Initializing /data/qa-17335/1.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 50 minutes 54 seconds Finished: SUCCESS