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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins8707875258535795219.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37032_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:21:44,142 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:21:44,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:21:44,143 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:44,144 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:21:44,144 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:21:44,145 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:21:44,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:21:44,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:44,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:21:44,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:21:44,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:21:44,146 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:21:44,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:21:44,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:21:44,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:21:44,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:21:44,334 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:21:44,334 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:21:44,334 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:21:44,334 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:21:44,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:21:44,335 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:21:44,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 01:21:44,344] [main] java.version = 17.0.2 [testng] 01:21:44,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:21:44,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:44,388 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_01-21-44.log] [testng] 01:21:44,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 01:21:44,391] [main] testng.directory = /data [testng] [2024-10-27 01:21:44,391] [main] testng.configDirectory = /config [testng] [2024-10-27 01:21:44,400] [main] testng.multiplier = 1.0 [testng] [2024-10-27 01:21:44,401] [main] testng.in-memory = false [testng] [2024-10-27 01:21:44,401] [main] testng.allow-missing = false [testng] [2024-10-27 01:21:44,401] [main] user.language = en [testng] [2024-10-27 01:21:44,401] [main] user.country = ${user.country} [testng] [2024-10-27 01:21:44,401] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 01:22:48,907] [main] ---------------------------------------- [testng] [2024-10-27 01:22:48,907] [main] Total files: 4426 [testng] [2024-10-27 01:22:48,907] [main] Scan time: 64.506 s (14 ms/file) [testng] [2024-10-27 01:22:48,907] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 01:32:57,943] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 01:32:57,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:32:57,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:57,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_01-32-57.log] [testng] 01:32:57,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3309a7ec - End of configuration. [testng] [2024-10-27 01:32:58,170] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 01:32:58,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:32:58,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:58,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_01-32-58.log] [testng] 01:32:58,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52546de0 - End of configuration. [testng] [2024-10-27 01:32:58,611] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 01:32:58,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:32:58,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:58,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_01-32-58.log] [testng] 01:32:58,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d9c939 - End of configuration. [testng] [2024-10-27 01:32:58,938] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 01:32:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:32:58,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:58,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_01-32-58.log] [testng] 01:32:58,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c16187b - End of configuration. [testng] [2024-10-27 01:32:59,178] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 01:32:59,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:32:59,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:59,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_01-32-59.log] [testng] 01:32:59,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c4ec6e - End of configuration. [testng] [2024-10-27 01:32:59,463] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 01:32:59,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:32:59,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:59,464 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_01-32-59.log] [testng] 01:32:59,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566f7fdc - End of configuration. [testng] [2024-10-27 01:32:59,720] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 01:32:59,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:32:59,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:59,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_01-32-59.log] [testng] 01:32:59,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5de2dbbe - End of configuration. [testng] [2024-10-27 01:32:59,931] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 01:32:59,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:32:59,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:59,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_01-32-59.log] [testng] 01:32:59,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e31d077 - End of configuration. [testng] [2024-10-27 01:33:00,172] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 01:33:00,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:33:00,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:00,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_01-33-00.log] [testng] 01:33:00,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e056100 - End of configuration. [testng] [2024-10-27 01:33:00,772] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 01:33:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:33:00,772 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:00,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_01-33-00.log] [testng] 01:33:00,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f42fdc - End of configuration. [testng] [2024-10-27 01:33:01,577] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 01:33:01,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:33:01,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:01,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_01-33-01.log] [testng] 01:33:01,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fddc3f - End of configuration. [testng] [2024-10-27 01:33:02,067] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 01:33:02,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:33:02,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:33:02,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_01-33-02.log] [testng] 01:33:02,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4916f1da - End of configuration. [testng] [2024-10-27 01:33:07,442] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-10-27 01:33:07,932] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-10-27 01:33:08,265] [pool-1-thread-3] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-10-27 01:33:12,410] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-10-27 01:33:12,946] [pool-1-thread-2] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-10-27 01:33:13,379] [pool-1-thread-1] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-10-27 01:33:14,027] [pool-1-thread-10] Initializing /data/martin/head.tif: [testng] [2024-10-27 01:33:14,469] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-10-27 01:33:15,001] [pool-1-thread-4] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-10-27 01:33:15,433] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-10-27 01:33:16,048] [pool-1-thread-11] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-10-27 01:33:17,616] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-10-27 01:33:20,865] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-27 01:33:22,036] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-10-27 01:33:22,734] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-10-27 01:33:23,224] [pool-1-thread-1] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-10-27 01:33:25,435] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-10-27 01:33:26,272] [pool-1-thread-4] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-10-27 01:33:27,423] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-10-27 01:33:28,370] [pool-1-thread-10] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-10-27 01:33:29,086] [pool-1-thread-6] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-10-27 01:33:29,938] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-10-27 01:33:30,550] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-10-27 01:33:35,930] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-10-27 01:33:38,027] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-10-27 01:33:39,068] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-10-27 01:33:39,893] [pool-1-thread-8] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-10-27 01:33:40,514] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-10-27 01:33:40,758] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-10-27 01:33:41,163] [pool-1-thread-6] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-10-27 01:33:41,533] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-10-27 01:33:42,166] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-10-27 01:33:43,007] [pool-1-thread-10] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-10-27 01:33:48,300] [pool-1-thread-7] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-10-27 01:33:49,351] [pool-1-thread-6] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-10-27 01:33:50,409] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-10-27 01:33:51,609] [pool-1-thread-4] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-10-27 01:33:52,696] [pool-1-thread-12] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-10-27 01:33:53,814] [pool-1-thread-8] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-10-27 01:33:54,903] [pool-1-thread-9] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-10-27 01:33:55,885] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-10-27 01:33:56,814] [pool-1-thread-2] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-10-27 01:33:57,462] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-10-27 01:33:58,162] [pool-1-thread-3] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-10-27 01:34:04,324] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-10-27 01:34:06,624] [pool-1-thread-5] Initializing 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[testng] [2024-10-27 01:42:46,712] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-10-27 01:42:48,284] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] [2024-10-27 01:42:48,805] [pool-1-thread-5] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-10-27 01:42:49,641] [pool-1-thread-2] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-10-27 01:42:49,864] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-10-27 01:42:50,159] [pool-1-thread-7] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-10-27 01:42:50,389] [pool-1-thread-4] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-10-27 01:42:50,570] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-10-27 01:42:51,760] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z018.tif: [testng] 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01:43:11,744] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-10-27 01:43:13,438] [pool-1-thread-8] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-10-27 01:43:14,053] [pool-1-thread-1] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-10-27 01:43:14,670] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-10-27 01:43:15,287] [pool-1-thread-11] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2024-10-27 01:43:16,101] [pool-1-thread-10] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-10-27 01:43:17,792] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-10-27 01:43:18,564] [pool-1-thread-12] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-10-27 01:43:18,923] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: 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Initializing /data/brian/retina/retina_C1_Z001.tif: [testng] [2024-10-27 01:43:26,305] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-10-27 01:43:28,317] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-10-27 01:43:28,957] [pool-1-thread-5] Initializing /data/misc/mri-old.mov: [testng] [2024-10-27 01:43:29,813] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2024-10-27 01:43:30,601] [pool-1-thread-2] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-10-27 01:43:31,017] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2024-10-27 01:43:31,318] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] [2024-10-27 01:43:31,637] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0216.TIF: [testng] [2024-10-27 01:43:31,955] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-10-27 01:43:32,210] [pool-1-thread-9] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-10-27 01:43:32,605] [pool-1-thread-5] Initializing /data/josiah/cell-Z32.C1.tiff: [testng] [2024-10-27 01:43:34,795] [pool-1-thread-7] Initializing /data/tobias/test002_1.tif: [testng] [2024-10-27 01:43:35,875] [pool-1-thread-11] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-10-27 01:43:36,772] [pool-1-thread-12] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-10-27 01:43:37,871] [pool-1-thread-8] Initializing /data/public/condensation/C4.pattern9.tif: [testng] [2024-10-27 01:43:38,071] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-10-27 01:43:38,285] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs016.TIF: [testng] [2024-10-27 01:43:38,474] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] [2024-10-27 01:43:38,667] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z032.tif: [testng] [2024-10-27 01:43:38,879] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2024-10-27 01:43:39,339] [pool-1-thread-6] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2024-10-27 01:43:39,674] [pool-1-thread-1] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2024-10-27 01:43:41,786] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-10-27 01:43:42,152] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs015.TIF: [testng] [2024-10-27 01:43:42,671] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z020.tif: [testng] [2024-10-27 01:43:43,021] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-10-27 01:43:43,286] [pool-1-thread-12] Initializing /data/josiah/cell-Z25.C1.tiff: [testng] [2024-10-27 01:43:43,550] [pool-1-thread-5] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-10-27 01:43:44,369] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z033.tif: [testng] [2024-10-27 01:43:45,769] [pool-1-thread-1] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-10-27 01:43:46,127] [pool-1-thread-10] Initializing /data/curtis/map/the-quick: [testng] [2024-10-27 01:43:46,340] [pool-1-thread-3] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-10-27 01:43:46,540] [pool-1-thread-6] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-10-27 01:43:47,774] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-10-27 01:43:48,488] [pool-1-thread-8] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-10-27 01:43:48,834] [pool-1-thread-9] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-10-27 01:43:49,225] [pool-1-thread-2] Initializing /data/damian/12m.tiff: [testng] [2024-10-27 01:43:49,697] [pool-1-thread-12] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-10-27 01:43:50,653] [pool-1-thread-5] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-10-27 01:43:51,004] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-10-27 01:43:51,314] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-10-27 01:43:53,966] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-10-27 01:43:54,330] [pool-1-thread-7] Initializing /data/brian/Alx-488-pk.tif: [testng] [2024-10-27 01:43:55,394] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-10-27 01:43:55,811] [pool-1-thread-10] Initializing /data/edward/TestDoc2.tif: [testng] [2024-10-27 01:43:56,024] [pool-1-thread-5] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-10-27 01:43:56,309] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-10-27 01:43:56,462] [pool-1-thread-8] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-10-27 01:43:56,640] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-10-27 01:43:58,738] [pool-1-thread-1] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-10-27 01:43:59,538] [pool-1-thread-7] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-10-27 01:43:59,975] [pool-1-thread-3] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-10-27 01:44:00,413] [pool-1-thread-6] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-10-27 01:44:00,685] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-10-27 01:44:01,018] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-10-27 01:44:01,225] [pool-1-thread-11] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-10-27 01:44:01,428] [pool-1-thread-12] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-10-27 01:44:01,651] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-10-27 01:44:02,157] [pool-1-thread-4] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-10-27 01:44:02,604] [pool-1-thread-9] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-10-27 01:44:05,221] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-10-27 01:44:05,602] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-10-27 01:44:05,980] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-10-27 01:44:06,299] [pool-1-thread-10] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-10-27 01:44:08,679] [pool-1-thread-3] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-10-27 01:44:08,908] [pool-1-thread-2] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-10-27 01:44:08,963] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-10-27 01:44:09,183] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-10-27 01:44:09,331] [pool-1-thread-5] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-10-27 01:44:09,471] [pool-1-thread-8] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-10-27 01:44:11,909] [pool-1-thread-1] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-10-27 01:44:12,185] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-10-27 01:44:12,642] [pool-1-thread-12] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-10-27 01:44:13,057] [pool-1-thread-4] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-10-27 01:44:13,346] [pool-1-thread-2] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-10-27 01:44:13,635] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [2024-10-27 01:44:13,816] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-10-27 01:44:13,980] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 minutes 3 seconds Finished: SUCCESS