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Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins16317880802115141653.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37317_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:15:07,728 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:15:07,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:15:07,729 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:07,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:07,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:15:07,731 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:15:07,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:15:07,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:07,732 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:07,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:15:07,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:15:07,732 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:15:07,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:15:07,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:15:07,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:15:07,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:15:08,007 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:15:08,008 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:15:08,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:15:08,008 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:15:08,009 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:15:08,010 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:15:08,010 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 278 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 03:15:08,021] [main] java.version = 1.8.0_342 [testng] 03:15:08,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:15:08,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:08,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_03-15-08.log] [testng] 03:15:08,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 03:15:08,073] [main] testng.directory = /data [testng] [2024-10-28 03:15:08,074] [main] testng.configDirectory = /config [testng] [2024-10-28 03:15:08,086] [main] testng.multiplier = 1.0 [testng] [2024-10-28 03:15:08,087] [main] testng.in-memory = false [testng] [2024-10-28 03:15:08,087] [main] testng.allow-missing = false [testng] [2024-10-28 03:15:08,087] [main] user.language = fr [testng] [2024-10-28 03:15:08,087] [main] user.country = FR [testng] [2024-10-28 03:15:08,087] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 03:15:10,534] [main] ---------------------------------------- [testng] [2024-10-28 03:15:10,534] [main] Total files: 18 [testng] [2024-10-28 03:15:10,534] [main] Scan time: 2.447 s (135 ms/file) [testng] [2024-10-28 03:15:10,534] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 03:15:20,078] [pool-1-thread-1] Initializing /data/ascb/423.psd: [testng] 03:15:20,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:15:20,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:20,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_03-15-20.log] [testng] 03:15:20,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6282ff97 - End of configuration. [testng] [2024-10-28 03:15:20,590] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 03:15:20,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:15:20,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:20,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_03-15-20.log] [testng] 03:15:20,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5e46b2 - End of configuration. [testng] [2024-10-28 03:15:21,198] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 03:15:21,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:15:21,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:21,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_03-15-21.log] [testng] 03:15:21,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a6f2907 - End of configuration. [testng] [2024-10-28 03:15:21,720] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] 03:15:21,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:15:21,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:21,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_03-15-21.log] [testng] 03:15:21,722 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2600a4 - End of configuration. [testng] [2024-10-28 03:15:22,128] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 03:15:22,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:15:22,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:22,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_03-15-22.log] [testng] 03:15:22,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1826f650 - End of configuration. [testng] [2024-10-28 03:15:22,647] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] 03:15:22,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:15:22,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:22,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_03-15-22.log] [testng] 03:15:22,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3af62591 - End of configuration. [testng] [2024-10-28 03:15:23,054] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 03:15:23,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:15:23,054 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:23,055 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_03-15-23.log] [testng] 03:15:23,055 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65e496b3 - End of configuration. [testng] [2024-10-28 03:15:23,466] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 03:15:23,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:15:23,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:23,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_03-15-23.log] [testng] 03:15:23,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@489b3e0e - End of configuration. [testng] [2024-10-28 03:15:23,911] [pool-1-thread-5] Initializing /data/misc/smilie.psd: [testng] 03:15:23,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:15:23,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:23,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_03-15-23.log] [testng] 03:15:23,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fec57a0 - End of configuration. [testng] [2024-10-28 03:15:24,293] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 03:15:24,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:15:24,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:24,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_03-15-24.log] [testng] 03:15:24,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@751bf076 - End of configuration. [testng] [2024-10-28 03:15:24,701] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 03:15:24,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:15:24,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:24,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_03-15-24.log] [testng] 03:15:24,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e10f29 - End of configuration. [testng] [2024-10-28 03:15:25,157] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 03:15:25,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:15:25,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:25,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_03-15-25.log] [testng] 03:15:25,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c760ab3 - End of configuration. [testng] [2024-10-28 03:15:30,906] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-10-28 03:15:31,382] [pool-1-thread-5] Initializing /data/misc/venus_composite.psd: [testng] [2024-10-28 03:15:31,800] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-10-28 03:15:32,246] [pool-1-thread-8] Initializing /data/cris/house.tif: [testng] [2024-10-28 03:15:33,608] [pool-1-thread-11] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-10-28 03:15:34,015] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 41 seconds Finished: SUCCESS