Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 250
originally caused by:
 Started by upstream project "Trigger" build number 274
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15698662965553066299.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_39327_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:22:15,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:22:15,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:22:15,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:15,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:22:15,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:22:15,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:22:15,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:22:15,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:15,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:22:15,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:22:15,077 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:22:15,077 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:22:15,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:22:15,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:22:15,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:22:15,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:22:15,284 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:22:15,284 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:22:15,284 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:22:15,285 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:22:15,285 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:22:15,286 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:22:15,286 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-09 00:22:15,295] [main] java.version = 11.0.16
   [testng] 00:22:15,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:22:15,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:22:15,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-09_00-22-15.log]
   [testng] 00:22:15,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-09 00:22:15,351] [main] testng.directory = /data
   [testng] [2024-11-09 00:22:15,351] [main] testng.configDirectory = /config
   [testng] [2024-11-09 00:22:15,364] [main] testng.multiplier = 1.0
   [testng] [2024-11-09 00:22:15,365] [main] testng.in-memory = false
   [testng] [2024-11-09 00:22:15,365] [main] testng.allow-missing = false
   [testng] [2024-11-09 00:22:15,365] [main] user.language = en
   [testng] [2024-11-09 00:22:15,365] [main] user.country = ${user.country}
   [testng] [2024-11-09 00:22:15,366] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-09 00:22:37,749] [main] ----------------------------------------
   [testng] [2024-11-09 00:22:37,749] [main] Total files: 315
   [testng] [2024-11-09 00:22:37,749] [main] Scan time: 22.383 s (71 ms/file)
   [testng] [2024-11-09 00:22:37,749] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 192 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-09 00:35:51,624] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: 
   [testng] 00:35:51,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:35:51,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:51,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-09_00-35-51.log]
   [testng] 00:35:51,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c47c5ec - End of configuration.
   [testng] [2024-11-09 00:35:52,564] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: 
   [testng] 00:35:52,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:35:52,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:52,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-09_00-35-52.log]
   [testng] 00:35:52,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4924e987 - End of configuration.
   [testng] [2024-11-09 00:35:53,413] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: 
   [testng] 00:35:53,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:35:53,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:53,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-09_00-35-53.log]
   [testng] 00:35:53,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a821928 - End of configuration.
   [testng] [2024-11-09 00:35:53,927] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: 
   [testng] 00:35:53,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:35:53,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:53,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-09_00-35-53.log]
   [testng] 00:35:53,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29c52e7 - End of configuration.
   [testng] [2024-11-09 00:35:54,748] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: 
   [testng] 00:35:54,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:35:54,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:54,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-09_00-35-54.log]
   [testng] 00:35:54,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ac67e3b - End of configuration.
   [testng] [2024-11-09 00:35:55,163] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: 
   [testng] 00:35:55,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:35:55,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:55,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-09_00-35-55.log]
   [testng] 00:35:55,165 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dfdcc3c - End of configuration.
   [testng] [2024-11-09 00:35:55,901] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: 
   [testng] 00:35:55,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:35:55,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:55,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-09_00-35-55.log]
   [testng] 00:35:55,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b538308 - End of configuration.
   [testng] [2024-11-09 00:35:57,085] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: 
   [testng] 00:35:57,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:35:57,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:57,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-09_00-35-57.log]
   [testng] 00:35:57,086 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55cee9db - End of configuration.
   [testng] [2024-11-09 00:35:58,216] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: 
   [testng] 00:35:58,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:35:58,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:58,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-09_00-35-58.log]
   [testng] 00:35:58,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b066a48 - End of configuration.
   [testng] [2024-11-09 00:35:58,762] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: 
   [testng] 00:35:58,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:35:58,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:58,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-09_00-35-58.log]
   [testng] 00:35:58,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58cbafb2 - End of configuration.
   [testng] [2024-11-09 00:35:59,682] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: 
   [testng] 00:35:59,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:35:59,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:35:59,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-09_00-35-59.log]
   [testng] 00:35:59,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63729f8c - End of configuration.
   [testng] [2024-11-09 00:36:01,221] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: 
   [testng] 00:36:01,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:36:01,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:36:01,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-09_00-36-01.log]
   [testng] 00:36:01,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46583b94 - End of configuration.
   [testng] [2024-11-09 00:36:07,949] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: 
   [testng] [2024-11-09 00:36:11,193] [pool-1-thread-10] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: 
   [testng] [2024-11-09 00:36:12,042] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: 
   [testng] [2024-11-09 00:36:15,590] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.oir: 
   [testng] [2024-11-09 00:36:16,177] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: 
   [testng] [2024-11-09 00:36:18,856] [pool-1-thread-7] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: 
   [testng] [2024-11-09 00:36:21,191] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: 
   [testng] [2024-11-09 00:36:21,251] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: 
   [testng] [2024-11-09 00:36:22,443] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: 
   [testng] [2024-11-09 00:36:24,643] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-09 00:36:30,169] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: 
   [testng] [2024-11-09 00:36:32,446] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: 
   [testng] [2024-11-09 00:36:34,219] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: 
   [testng] [2024-11-09 00:36:35,283] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-09 00:36:37,265] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif: 
   [testng] [2024-11-09 00:36:39,034] [pool-1-thread-7] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: 
   [testng] [2024-11-09 00:36:39,946] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: 
   [testng] [2024-11-09 00:36:43,927] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: 
   [testng] [2024-11-09 00:36:45,451] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: 
   [testng] [2024-11-09 00:36:47,904] [pool-1-thread-5] Initializing /data/qa-17293/Clipboard.tif: 
   [testng] [2024-11-09 00:36:50,535] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: 
   [testng] [2024-11-09 00:36:53,202] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: 
   [testng] [2024-11-09 00:36:54,411] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: 
   [testng] [2024-11-09 00:36:55,268] [pool-1-thread-9] Initializing /data/olympus/XYZt.oir: 
   [testng] [2024-11-09 00:37:01,439] [pool-1-thread-11] Initializing /data/olympus/XYZt.ome.tif: 
   [testng] [2024-11-09 00:37:03,540] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: 
   [testng] [2024-11-09 00:37:04,355] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: 
   [testng] [2024-11-09 00:37:09,868] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: 
   [testng] [2024-11-09 00:37:10,910] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: 
   [testng] [2024-11-09 00:37:12,518] [pool-1-thread-11] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: 
   [testng] [2024-11-09 00:37:16,725] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: 
   [testng] [2024-11-09 00:37:19,690] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: 
   [testng] [2024-11-09 00:37:21,069] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.oir: 
   [testng] [2024-11-09 00:37:21,832] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.ome.tif: 
   [testng] [2024-11-09 00:37:23,829] [pool-1-thread-8] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: 
   [testng] [2024-11-09 00:37:29,814] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: 
   [testng] [2024-11-09 00:37:31,448] [pool-1-thread-10] Initializing /data/olympus/XYZt.vsi: 
   [testng] [2024-11-09 00:37:32,205] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: 
   [testng] [2024-11-09 00:37:33,301] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: 
   [testng] [2024-11-09 00:37:35,350] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: 
   [testng] [2024-11-09 00:37:41,734] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: 
   [testng] [2024-11-09 00:37:45,636] [pool-1-thread-9] Initializing /data/qa-17922/example_multipart.oir: 
   [testng] [2024-11-09 00:38:09,053] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: 
   [testng] [2024-11-09 00:38:10,468] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: 
   [testng] [2024-11-09 00:38:12,732] [pool-1-thread-8] Initializing /data/qa-17917/f10010.oir: 
   [testng] [2024-11-09 00:38:41,331] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: 
   [testng] [2024-11-09 00:38:46,681] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: 
   [testng] [2024-11-09 00:38:50,417] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: 
   [testng] [2024-11-09 00:38:51,319] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: 
   [testng] [2024-11-09 00:38:52,137] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: 
   [testng] [2024-11-09 00:38:55,291] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir: 
   [testng] [2024-11-09 00:38:57,175] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: 
   [testng] [2024-11-09 00:38:58,245] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: 
   [testng] [2024-11-09 00:38:59,918] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: 
   [testng] [2024-11-09 00:39:00,552] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-09 00:39:03,010] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: 
   [testng] [2024-11-09 00:39:04,395] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.oir: 
   [testng] [2024-11-09 00:39:06,612] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: 
   [testng] [2024-11-09 00:39:08,926] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.oir: 
   [testng] [2024-11-09 00:39:10,948] [pool-1-thread-2] Initializing /data/olympus/Clipboard-XYZt.tif: 
   [testng] [2024-11-09 00:39:14,797] [pool-1-thread-5] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: 
   [testng] [2024-11-09 00:39:15,374] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: 
   [testng] [2024-11-09 00:39:19,451] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: 
   [testng] [2024-11-09 00:39:22,241] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif: 
   [testng] [2024-11-09 00:39:25,752] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: 
   [testng] [2024-11-09 00:39:27,026] [pool-1-thread-3] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: 
   [testng] [2024-11-09 00:39:28,845] [pool-1-thread-11] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: 
   [testng] [2024-11-09 00:39:29,592] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-alexa488.tif: 
   [testng] [2024-11-09 00:39:31,612] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: 
   [testng] [2024-11-09 00:39:33,904] [pool-1-thread-2] Initializing /data/qa-17270/stack1.ome.tif: 
   [testng] [2024-11-09 00:39:37,096] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: 
   [testng] [2024-11-09 00:39:38,825] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2.ome.tif: 
   [testng] [2024-11-09 00:39:39,551] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: 
   [testng] [2024-11-09 00:39:40,374] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: 
   [testng] [2024-11-09 00:39:41,804] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: 
   [testng] [2024-11-09 00:39:42,570] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir: 
   [testng] [2024-11-09 00:39:46,547] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: 
   [testng] [2024-11-09 00:39:47,282] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: 
   [testng] [2024-11-09 00:39:48,093] [pool-1-thread-7] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: 
   [testng] [2024-11-09 00:39:48,577] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: 
   [testng] [2024-11-09 00:39:49,406] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: 
   [testng] [2024-11-09 00:39:53,317] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-09 00:39:55,022] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: 
   [testng] [2024-11-09 00:39:56,997] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: 
   [testng] [2024-11-09 00:39:58,895] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: 
   [testng] [2024-11-09 00:40:03,151] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: 
   [testng] [2024-11-09 00:40:03,785] [pool-1-thread-3] Initializing /data/qa-17270/Clipboard-stack1.tif: 
   [testng] [2024-11-09 00:40:06,214] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: 
   [testng] [2024-11-09 00:40:13,602] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: 
   [testng] [2024-11-09 00:40:14,106] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: 
   [testng] [2024-11-09 00:40:15,349] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: 
   [testng] [2024-11-09 00:40:18,752] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: 
   [testng] [2024-11-09 00:40:19,327] [pool-1-thread-2] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: 
   [testng] [2024-11-09 00:41:13,773] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: 
   [testng] [2024-11-09 00:41:16,177] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: 
   [testng] [2024-11-09 00:41:17,993] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: 
   [testng] [2024-11-09 00:41:19,116] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: 
   [testng] [2024-11-09 00:41:20,508] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: 
   [testng] [2024-11-09 00:41:27,986] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.oir: 
   [testng] [2024-11-09 00:41:29,881] [pool-1-thread-7] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: 
   [testng] [2024-11-09 00:41:30,610] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif: 
   [testng] [2024-11-09 00:41:32,848] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: 
   [testng] [2024-11-09 00:41:37,896] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: 
   [testng] [2024-11-09 00:41:39,084] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-09 00:41:43,126] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: 
   [testng] [2024-11-09 00:41:43,877] [pool-1-thread-4] Initializing /data/public/etienne/amy slice z stack_0001.oir: 
   [testng] [2024-11-09 00:41:44,502] [pool-1-thread-7] Initializing /data/qa-17270/image1.ome.tif: 
   [testng] [2024-11-09 00:41:49,716] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: 
   [testng] [2024-11-09 00:41:51,739] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: 
   [testng] [2024-11-09 00:41:52,893] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.ome.tif: 
   [testng] [2024-11-09 00:41:53,626] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.vsi: 
   [testng] [2024-11-09 00:41:54,010] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: 
   [testng] [2024-11-09 00:42:00,167] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: 
   [testng] [2024-11-09 00:42:00,998] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.ome.tif: 
   [testng] [2024-11-09 00:42:01,842] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: 
   [testng] [2024-11-09 00:42:03,253] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: 
   [testng] [2024-11-09 00:42:04,613] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: 
   [testng] [2024-11-09 00:42:09,463] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: 
   [testng] [2024-11-09 00:42:10,044] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.oir: 
   [testng] [2024-11-09 00:42:10,856] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: 
   [testng] [2024-11-09 00:42:12,705] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: 
   [testng] [2024-11-09 00:42:17,404] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir: 
   [testng] [2024-11-09 00:42:21,354] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: 
   [testng] [2024-11-09 00:42:22,233] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: 
   [testng] [2024-11-09 00:42:22,691] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: 
   [testng] [2024-11-09 00:42:23,078] [pool-1-thread-11] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: 
   [testng] [2024-11-09 00:42:27,670] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: 
   [testng] [2024-11-09 00:42:28,204] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: 
   [testng] [2024-11-09 00:42:28,622] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: 
   [testng] [2024-11-09 00:42:29,692] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: 
   [testng] [2024-11-09 00:42:34,798] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: 
   [testng] [2024-11-09 00:42:35,532] [pool-1-thread-5] Initializing /data/olympus/calcium sparks.jpg: 
   [testng] [2024-11-09 00:42:36,134] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: 
   [testng] [2024-11-09 00:42:36,734] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir: 
   [testng] [2024-11-09 00:42:37,424] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: 
   [testng] [2024-11-09 00:42:40,675] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: 
   [testng] [2024-11-09 00:42:42,688] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: 
   [testng] [2024-11-09 00:42:44,653] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: 
   [testng] [2024-11-09 00:42:45,908] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: 
   [testng] [2024-11-09 00:42:48,399] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: 
   [testng] [2024-11-09 00:42:49,305] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: 
   [testng] [2024-11-09 00:42:51,253] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: 
   [testng] [2024-11-09 00:42:52,325] [pool-1-thread-4] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: 
   [testng] [2024-11-09 00:42:58,873] [pool-1-thread-9] Initializing /data/qa-17331/60x zstack RS.ome.tif: 
   [testng] [2024-11-09 00:43:00,443] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: 
   [testng] [2024-11-09 00:43:01,194] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: 
   [testng] [2024-11-09 00:43:02,210] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: 
   [testng] [2024-11-09 00:43:02,796] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: 
   [testng] [2024-11-09 00:43:09,404] [pool-1-thread-10] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: 
   [testng] [2024-11-09 00:43:09,972] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: 
   [testng] [2024-11-09 00:43:10,913] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: 
   [testng] [2024-11-09 00:43:12,286] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: 
   [testng] [2024-11-09 00:43:12,773] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/Clipboard.tif: 
   [testng] [2024-11-09 00:43:14,298] [pool-1-thread-6] Initializing /data/qa-17270/alexa488.oir: 
   [testng] [2024-11-09 00:43:16,900] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: 
   [testng] [2024-11-09 00:43:18,838] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: 
   [testng] [2024-11-09 00:43:19,667] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: 
   [testng] [2024-11-09 00:43:28,633] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: 
   [testng] [2024-11-09 00:43:30,338] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: 
   [testng] [2024-11-09 00:43:33,016] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: 
   [testng] [2024-11-09 00:43:33,746] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: 
   [testng] [2024-11-09 00:43:34,846] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: 
   [testng] [2024-11-09 00:43:37,969] [pool-1-thread-11] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: 
   [testng] [2024-11-09 00:43:39,206] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: 
   [testng] [2024-11-09 00:43:39,673] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: 
   [testng] [2024-11-09 00:43:41,255] [pool-1-thread-8] Initializing /data/qa-17335/Clipboard-1.tif: 
   [testng] [2024-11-09 00:43:44,056] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: 
   [testng] [2024-11-09 00:43:49,324] [pool-1-thread-11] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: 
   [testng] [2024-11-09 00:43:51,046] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: 
   [testng] [2024-11-09 00:43:52,439] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir: 
   [testng] [2024-11-09 00:43:57,366] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: 
   [testng] [2024-11-09 00:43:58,370] [pool-1-thread-11] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: 
   [testng] [2024-11-09 00:43:59,933] [pool-1-thread-3] Initializing /data/qa-17335/1.oir: 
   [testng] [2024-11-09 00:44:00,542] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: 
   [testng] [2024-11-09 00:44:05,215] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: 
   [testng] [2024-11-09 00:44:06,197] [pool-1-thread-3] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: 
   [testng] [2024-11-09 00:44:06,680] [pool-1-thread-7] Initializing /data/qa-17919/f10187.oir: 
   [testng] [2024-11-09 00:44:25,509] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: 
   [testng] [2024-11-09 00:44:27,518] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: 
   [testng] [2024-11-09 00:44:34,359] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.oir: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 10176, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 55 minutes 4 seconds
Finished: SUCCESS