Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 257
originally caused by:
 Started by upstream project "Trigger" build number 281
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins896167404746779531.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_40475_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 00:21:09,989 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 00:21:09,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service.
   [testng] 00:21:09,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:09,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 00:21:09,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 00:21:09,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 00:21:09,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 00:21:09,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:09,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 00:21:09,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 00:21:09,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 00:21:09,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 00:21:10,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 00:21:10,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 00:21:10,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 00:21:10,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 00:21:10,201 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 00:21:10,201 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 00:21:10,201 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 00:21:10,201 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 00:21:10,201 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration.
   [testng] 00:21:10,202 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point
   [testng] 00:21:10,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-16 00:21:10,211] [main] java.version = 11.0.16
   [testng] 00:21:10,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 00:21:10,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:21:10,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-16_00-21-10.log]
   [testng] 00:21:10,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration.
   [testng] [2024-11-16 00:21:10,265] [main] testng.directory = /data
   [testng] [2024-11-16 00:21:10,265] [main] testng.configDirectory = /config
   [testng] [2024-11-16 00:21:10,275] [main] testng.multiplier = 1.0
   [testng] [2024-11-16 00:21:10,276] [main] testng.in-memory = false
   [testng] [2024-11-16 00:21:10,276] [main] testng.allow-missing = false
   [testng] [2024-11-16 00:21:10,276] [main] user.language = en
   [testng] [2024-11-16 00:21:10,276] [main] user.country = ${user.country}
   [testng] [2024-11-16 00:21:10,277] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-16 00:21:33,349] [main] ----------------------------------------
   [testng] [2024-11-16 00:21:33,349] [main] Total files: 315
   [testng] [2024-11-16 00:21:33,349] [main] Scan time: 23.071 s (73 ms/file)
   [testng] [2024-11-16 00:21:33,349] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 192 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-16 00:32:05,767] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.oir: 
   [testng] 00:32:05,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 00:32:05,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:05,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-16_00-32-05.log]
   [testng] 00:32:05,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a3b9ffc - End of configuration.
   [testng] [2024-11-16 00:32:06,352] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: 
   [testng] 00:32:06,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 00:32:06,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:06,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-16_00-32-06.log]
   [testng] 00:32:06,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2524092b - End of configuration.
   [testng] [2024-11-16 00:32:06,608] [pool-1-thread-11] Initializing /data/qa-21508/Stitch_A01_G008.oir: 
   [testng] 00:32:06,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 00:32:06,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:06,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-16_00-32-06.log]
   [testng] 00:32:06,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66cd58d0 - End of configuration.
   [testng] [2024-11-16 00:32:06,799] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: 
   [testng] 00:32:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 00:32:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:06,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-16_00-32-06.log]
   [testng] 00:32:06,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57a2c1ad - End of configuration.
   [testng] [2024-11-16 00:32:07,056] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: 
   [testng] 00:32:07,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 00:32:07,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:07,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-16_00-32-07.log]
   [testng] 00:32:07,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@572311e1 - End of configuration.
   [testng] [2024-11-16 00:32:07,188] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.ome.tif: 
   [testng] 00:32:07,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 00:32:07,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:07,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-16_00-32-07.log]
   [testng] 00:32:07,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7833f4b3 - End of configuration.
   [testng] [2024-11-16 00:32:07,471] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: 
   [testng] 00:32:07,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 00:32:07,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:07,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-16_00-32-07.log]
   [testng] 00:32:07,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c07c8fe - End of configuration.
   [testng] [2024-11-16 00:32:07,823] [pool-1-thread-6] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: 
   [testng] 00:32:07,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 00:32:07,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:07,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-16_00-32-07.log]
   [testng] 00:32:07,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1337edae - End of configuration.
   [testng] [2024-11-16 00:32:08,153] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: 
   [testng] 00:32:08,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 00:32:08,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:08,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-16_00-32-08.log]
   [testng] 00:32:08,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@140f85dd - End of configuration.
   [testng] [2024-11-16 00:32:08,335] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.ome.tif: 
   [testng] 00:32:08,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 00:32:08,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:08,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-16_00-32-08.log]
   [testng] 00:32:08,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@594c2ea8 - End of configuration.
   [testng] [2024-11-16 00:32:08,736] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: 
   [testng] 00:32:08,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 00:32:08,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:08,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-16_00-32-08.log]
   [testng] 00:32:08,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ccc4c3 - End of configuration.
   [testng] [2024-11-16 00:32:09,066] [pool-1-thread-2] Initializing /data/qa-17270/image1.oir: 
   [testng] 00:32:09,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 00:32:09,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 00:32:09,067 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-16_00-32-09.log]
   [testng] 00:32:09,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60171aa8 - End of configuration.
   [testng] [2024-11-16 00:32:13,205] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: 
   [testng] [2024-11-16 00:32:14,032] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: 
   [testng] [2024-11-16 00:32:14,409] [pool-1-thread-12] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: 
   [testng] [2024-11-16 00:32:17,210] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.oir: 
   [testng] [2024-11-16 00:32:17,548] [pool-1-thread-8] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: 
   [testng] [2024-11-16 00:32:18,745] [pool-1-thread-3] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: 
   [testng] [2024-11-16 00:32:19,209] [pool-1-thread-6] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: 
   [testng] [2024-11-16 00:32:19,234] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: 
   [testng] [2024-11-16 00:32:20,861] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: 
   [testng] [2024-11-16 00:32:22,100] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-16 00:32:25,162] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: 
   [testng] [2024-11-16 00:32:28,157] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir: 
   [testng] [2024-11-16 00:32:28,639] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: 
   [testng] [2024-11-16 00:32:29,316] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-16 00:32:29,876] [pool-1-thread-3] Initializing /data/qa-17409/Clipboard.tif: 
   [testng] [2024-11-16 00:32:30,977] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: 
   [testng] [2024-11-16 00:32:33,120] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: 
   [testng] [2024-11-16 00:32:34,414] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: 
   [testng] [2024-11-16 00:32:37,356] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: 
   [testng] [2024-11-16 00:32:37,982] [pool-1-thread-8] Initializing /data/qa-17293/Clipboard.tif: 
   [testng] [2024-11-16 00:32:38,678] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: 
   [testng] [2024-11-16 00:32:39,719] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: 
   [testng] [2024-11-16 00:32:42,080] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: 
   [testng] [2024-11-16 00:32:44,290] [pool-1-thread-4] Initializing /data/olympus/XYZt.oir: 
   [testng] [2024-11-16 00:32:45,687] [pool-1-thread-3] Initializing /data/olympus/XYZt.ome.tif: 
   [testng] [2024-11-16 00:32:46,152] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: 
   [testng] [2024-11-16 00:32:46,441] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: 
   [testng] [2024-11-16 00:32:46,660] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: 
   [testng] [2024-11-16 00:32:48,566] [pool-1-thread-5] Initializing /data/qa-16871/Clipboard.tif: 
   [testng] [2024-11-16 00:32:51,116] [pool-1-thread-8] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: 
   [testng] [2024-11-16 00:32:52,461] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: 
   [testng] [2024-11-16 00:32:53,399] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: 
   [testng] [2024-11-16 00:32:54,178] [pool-1-thread-5] Initializing /data/qa-16881/P10-50 D2.oir: 
   [testng] [2024-11-16 00:32:55,499] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.ome.tif: 
   [testng] [2024-11-16 00:32:58,213] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: 
   [testng] [2024-11-16 00:32:58,592] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: 
   [testng] [2024-11-16 00:32:59,637] [pool-1-thread-5] Initializing /data/olympus/XYZt.vsi: 
   [testng] [2024-11-16 00:33:00,192] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: 
   [testng] [2024-11-16 00:33:02,046] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: 
   [testng] [2024-11-16 00:33:02,653] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: 
   [testng] [2024-11-16 00:33:03,067] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: 
   [testng] [2024-11-16 00:33:03,653] [pool-1-thread-5] Initializing /data/qa-17922/example_multipart.oir: 
   [testng] [2024-11-16 00:33:27,318] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: 
   [testng] [2024-11-16 00:33:28,696] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: 
   [testng] [2024-11-16 00:33:29,943] [pool-1-thread-4] Initializing /data/qa-17917/f10010.oir: 
   [testng] [2024-11-16 00:34:01,346] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: 
   [testng] [2024-11-16 00:34:03,029] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: 
   [testng] [2024-11-16 00:34:03,714] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: 
   [testng] [2024-11-16 00:34:04,211] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: 
   [testng] [2024-11-16 00:34:04,794] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: 
   [testng] [2024-11-16 00:34:05,249] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: 
   [testng] [2024-11-16 00:34:09,499] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: 
   [testng] [2024-11-16 00:34:10,798] [pool-1-thread-1] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: 
   [testng] [2024-11-16 00:34:11,941] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.oir: 
   [testng] [2024-11-16 00:34:12,479] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-16 00:34:13,058] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: 
   [testng] [2024-11-16 00:34:16,379] [pool-1-thread-11] Initializing /data/olympus/spectral_scan_XYL.oir: 
   [testng] [2024-11-16 00:34:17,169] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: 
   [testng] [2024-11-16 00:34:19,209] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0019.oir: 
   [testng] [2024-11-16 00:34:22,342] [pool-1-thread-10] Initializing /data/olympus/Clipboard-XYZt.tif: 
   [testng] [2024-11-16 00:34:23,232] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: 
   [testng] [2024-11-16 00:34:23,850] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: 
   [testng] [2024-11-16 00:34:28,253] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: 
   [testng] [2024-11-16 00:34:34,709] [pool-1-thread-6] Initializing /data/qa-17270/Clipboard-image1.tif: 
   [testng] [2024-11-16 00:34:36,401] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: 
   [testng] [2024-11-16 00:34:37,981] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: 
   [testng] [2024-11-16 00:34:38,729] [pool-1-thread-7] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: 
   [testng] [2024-11-16 00:34:40,322] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-alexa488.tif: 
   [testng] [2024-11-16 00:34:43,278] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: 
   [testng] [2024-11-16 00:34:47,520] [pool-1-thread-7] Initializing /data/qa-17270/stack1.ome.tif: 
   [testng] [2024-11-16 00:34:48,278] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: 
   [testng] [2024-11-16 00:34:49,587] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif: 
   [testng] [2024-11-16 00:34:50,509] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: 
   [testng] [2024-11-16 00:34:51,292] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: 
   [testng] [2024-11-16 00:34:55,823] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: 
   [testng] [2024-11-16 00:34:59,045] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0024.oir: 
   [testng] [2024-11-16 00:34:59,768] [pool-1-thread-8] Initializing /data/qa-17335/1.ome.tif: 
   [testng] [2024-11-16 00:35:00,394] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: 
   [testng] [2024-11-16 00:35:01,457] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: 
   [testng] [2024-11-16 00:35:02,250] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: 
   [testng] [2024-11-16 00:35:05,438] [pool-1-thread-3] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: 
   [testng] [2024-11-16 00:35:08,626] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: 
   [testng] [2024-11-16 00:35:10,066] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: 
   [testng] [2024-11-16 00:35:11,015] [pool-1-thread-6] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: 
   [testng] [2024-11-16 00:35:12,357] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: 
   [testng] [2024-11-16 00:35:14,754] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: 
   [testng] [2024-11-16 00:35:18,598] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: 
   [testng] [2024-11-16 00:35:19,778] [pool-1-thread-6] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: 
   [testng] [2024-11-16 00:35:25,738] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: 
   [testng] [2024-11-16 00:35:26,717] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: 
   [testng] [2024-11-16 00:35:29,455] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: 
   [testng] [2024-11-16 00:35:32,320] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: 
   [testng] [2024-11-16 00:35:32,806] [pool-1-thread-11] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: 
   [testng] [2024-11-16 00:36:27,760] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: 
   [testng] [2024-11-16 00:36:31,175] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: 
   [testng] [2024-11-16 00:36:32,018] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: 
   [testng] [2024-11-16 00:36:33,655] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir: 
   [testng] [2024-11-16 00:36:34,158] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: 
   [testng] [2024-11-16 00:36:38,872] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir: 
   [testng] [2024-11-16 00:36:39,269] [pool-1-thread-7] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: 
   [testng] [2024-11-16 00:36:40,175] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.ome.tif: 
   [testng] [2024-11-16 00:36:41,086] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: 
   [testng] [2024-11-16 00:36:45,903] [pool-1-thread-3] Initializing /data/qa-17331/Clipboard.tif: 
   [testng] [2024-11-16 00:36:47,079] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: 
   [testng] [2024-11-16 00:36:50,581] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: 
   [testng] [2024-11-16 00:36:50,979] [pool-1-thread-8] Initializing /data/public/etienne/amy slice z stack_0001.oir: 
   [testng] [2024-11-16 00:36:51,315] [pool-1-thread-7] Initializing /data/qa-17270/image1.ome.tif: 
   [testng] [2024-11-16 00:36:54,974] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: 
   [testng] [2024-11-16 00:36:56,757] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: 
   [testng] [2024-11-16 00:36:58,075] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.ome.tif: 
   [testng] [2024-11-16 00:36:58,960] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.vsi: 
   [testng] [2024-11-16 00:36:59,460] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: 
   [testng] [2024-11-16 00:37:04,325] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: 
   [testng] [2024-11-16 00:37:04,717] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.ome.tif: 
   [testng] [2024-11-16 00:37:05,315] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: 
   [testng] [2024-11-16 00:37:05,768] [pool-1-thread-7] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: 
   [testng] [2024-11-16 00:37:09,085] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: 
   [testng] [2024-11-16 00:37:10,732] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.oir: 
   [testng] [2024-11-16 00:37:11,188] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir: 
   [testng] [2024-11-16 00:37:11,604] [pool-1-thread-7] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: 
   [testng] [2024-11-16 00:37:12,711] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: 
   [testng] [2024-11-16 00:37:18,497] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.oir: 
   [testng] [2024-11-16 00:37:21,019] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: 
   [testng] [2024-11-16 00:37:21,947] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: 
   [testng] [2024-11-16 00:37:22,767] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: 
   [testng] [2024-11-16 00:37:23,155] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: 
   [testng] [2024-11-16 00:37:27,192] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif: 
   [testng] [2024-11-16 00:37:27,671] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: 
   [testng] [2024-11-16 00:37:28,054] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: 
   [testng] [2024-11-16 00:37:28,491] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: 
   [testng] [2024-11-16 00:37:28,897] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: 
   [testng] [2024-11-16 00:37:34,761] [pool-1-thread-9] Initializing /data/olympus/calcium sparks.jpg: 
   [testng] [2024-11-16 00:37:34,946] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: 
   [testng] [2024-11-16 00:37:35,708] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001.oir: 
   [testng] [2024-11-16 00:37:36,426] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: 
   [testng] [2024-11-16 00:37:37,489] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: 
   [testng] [2024-11-16 00:37:40,232] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: 
   [testng] [2024-11-16 00:37:41,818] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: 
   [testng] [2024-11-16 00:37:43,269] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: 
   [testng] [2024-11-16 00:37:44,439] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: 
   [testng] [2024-11-16 00:37:46,703] [pool-1-thread-1] Initializing /data/olympus/calcium sparks_XYt.ome.tif: 
   [testng] [2024-11-16 00:37:48,230] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: 
   [testng] [2024-11-16 00:37:49,056] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: 
   [testng] [2024-11-16 00:37:56,063] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.ome.tif: 
   [testng] [2024-11-16 00:37:56,644] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: 
   [testng] [2024-11-16 00:37:57,606] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: 
   [testng] [2024-11-16 00:37:59,603] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: 
   [testng] [2024-11-16 00:38:01,038] [pool-1-thread-5] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: 
   [testng] [2024-11-16 00:38:07,007] [pool-1-thread-7] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: 
   [testng] [2024-11-16 00:38:07,937] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: 
   [testng] [2024-11-16 00:38:09,641] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: 
   [testng] [2024-11-16 00:38:10,552] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: 
   [testng] [2024-11-16 00:38:15,323] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/Clipboard.tif: 
   [testng] [2024-11-16 00:38:17,171] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.oir: 
   [testng] [2024-11-16 00:38:17,895] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: 
   [testng] [2024-11-16 00:38:21,048] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: 
   [testng] [2024-11-16 00:38:22,953] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: 
   [testng] [2024-11-16 00:38:31,254] [pool-1-thread-4] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: 
   [testng] [2024-11-16 00:38:35,789] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: 
   [testng] [2024-11-16 00:38:38,981] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: 
   [testng] [2024-11-16 00:38:41,038] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif: 
   [testng] [2024-11-16 00:38:42,255] [pool-1-thread-9] Initializing /data/qa-17270/stack1.oir: 
   [testng] [2024-11-16 00:38:45,114] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: 
   [testng] [2024-11-16 00:38:47,028] [pool-1-thread-2] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: 
   [testng] [2024-11-16 00:38:48,489] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.oir: 
   [testng] [2024-11-16 00:38:50,807] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-1.tif: 
   [testng] [2024-11-16 00:38:53,736] [pool-1-thread-1] Initializing /data/cudmore/20190401__0005.oir: 
   [testng] [2024-11-16 00:38:59,284] [pool-1-thread-4] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: 
   [testng] [2024-11-16 00:39:00,778] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: 
   [testng] [2024-11-16 00:39:03,691] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.oir: 
   [testng] [2024-11-16 00:39:05,262] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: 
   [testng] [2024-11-16 00:39:06,098] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: 
   [testng] [2024-11-16 00:39:07,558] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: 
   [testng] [2024-11-16 00:39:09,187] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: 
   [testng] [2024-11-16 00:39:14,482] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: 
   [testng] [2024-11-16 00:39:15,306] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: 
   [testng] [2024-11-16 00:39:15,797] [pool-1-thread-4] Initializing /data/qa-17919/f10187.oir: 
   [testng] [2024-11-16 00:39:34,927] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: 
   [testng] [2024-11-16 00:39:37,607] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: 
   [testng] [2024-11-16 00:39:38,205] [pool-1-thread-3] Initializing /data/qa-17335/stimulation_0001_LSM.oir: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 10176, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 51 minutes 17 seconds
Finished: SUCCESS