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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins17753192863477930643.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4087_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:11:20,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:11:20,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:11:20,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:20,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:20,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:11:20,605 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:11:20,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:11:20,605 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:20,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:20,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:11:20,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:11:20,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:11:20,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:11:20,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:11:20,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:11:20,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:11:20,887 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:11:20,887 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:11:20,887 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:11:20,888 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:11:20,888 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:11:20,888 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:11:20,889 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:11:20,899] [main] java.version = 1.8.0_342 [testng] 07:11:20,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:11:20,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:20,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-11-20.log] [testng] 07:11:20,952 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:11:20,954] [main] testng.directory = /data [testng] [2024-04-12 07:11:20,954] [main] testng.configDirectory = /config [testng] [2024-04-12 07:11:20,968] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:11:20,968] [main] testng.in-memory = false [testng] [2024-04-12 07:11:20,968] [main] testng.allow-missing = false [testng] [2024-04-12 07:11:20,968] [main] user.language = en [testng] [2024-04-12 07:11:20,969] [main] user.country = ${user.country} [testng] [2024-04-12 07:11:20,969] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:11:21,436] [main] ---------------------------------------- [testng] [2024-04-12 07:11:21,436] [main] Total files: 21 [testng] [2024-04-12 07:11:21,436] [main] Scan time: 0.467 s (22 ms/file) [testng] [2024-04-12 07:11:21,436] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:11:22,712] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 07:11:22,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:11:22,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,713 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-11-22.log] [testng] 07:11:22,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53899bf7 - End of configuration. [testng] [2024-04-12 07:11:22,769] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 07:11:22,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:11:22,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-11-22.log] [testng] 07:11:22,771 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33587b8e - End of configuration. [testng] [2024-04-12 07:11:22,783] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 07:11:22,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:11:22,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-11-22.log] [testng] 07:11:22,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3954f9e4 - End of configuration. [testng] [2024-04-12 07:11:22,797] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 07:11:22,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:11:22,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-11-22.log] [testng] 07:11:22,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b19898 - End of configuration. [testng] [2024-04-12 07:11:22,813] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 07:11:22,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:11:22,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,814 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-11-22.log] [testng] 07:11:22,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17fdd328 - End of configuration. [testng] [2024-04-12 07:11:22,828] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 07:11:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:11:22,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-11-22.log] [testng] 07:11:22,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42de1d6f - End of configuration. [testng] [2024-04-12 07:11:22,843] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 07:11:22,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:11:22,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-11-22.log] [testng] 07:11:22,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ab9237e - End of configuration. [testng] [2024-04-12 07:11:22,855] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 07:11:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:11:22,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-11-22.log] [testng] 07:11:22,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8c6e43 - End of configuration. [testng] [2024-04-12 07:11:22,869] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 07:11:22,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:11:22,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-11-22.log] [testng] 07:11:22,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26a0f652 - End of configuration. [testng] [2024-04-12 07:11:22,885] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 07:11:22,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:11:22,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-11-22.log] [testng] 07:11:22,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@971fb13 - End of configuration. [testng] [2024-04-12 07:11:22,899] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 07:11:22,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:11:22,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-11-22.log] [testng] 07:11:22,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@786f8324 - End of configuration. [testng] [2024-04-12 07:11:22,917] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 07:11:22,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:11:22,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:22,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-11-22.log] [testng] 07:11:22,919 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3bb7ee - End of configuration. [testng] [2024-04-12 07:11:25,384] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-04-12 07:11:25,399] [pool-1-thread-8] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-04-12 07:11:25,417] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-04-12 07:11:25,432] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-04-12 07:11:25,444] [pool-1-thread-9] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-04-12 07:11:25,456] [pool-1-thread-10] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-04-12 07:11:25,468] [pool-1-thread-5] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-04-12 07:11:25,482] [pool-1-thread-11] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS