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Started by upstream project "BIOFORMATS-test-repo" build number 31 originally caused by: Started by upstream project "Trigger" build number 35 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins12980444727312648522.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4088_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:11:24,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 07:11:24,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 07:11:24,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:24,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:24,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:11:24,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:11:24,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:11:24,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:24,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:24,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:11:24,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:11:24,966 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:11:25,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:11:25,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:11:25,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:11:25,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:11:25,310 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:11:25,310 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:11:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:11:25,311 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:11:25,311 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 07:11:25,312 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 07:11:25,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-12 07:11:25,327] [main] java.version = 1.8.0_342 [testng] 07:11:25,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:11:25,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:25,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-12_07-11-25.log] [testng] 07:11:25,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-12 07:11:25,407] [main] testng.directory = /data [testng] [2024-04-12 07:11:25,408] [main] testng.configDirectory = /config [testng] [2024-04-12 07:11:25,427] [main] testng.multiplier = 1.0 [testng] [2024-04-12 07:11:25,427] [main] testng.in-memory = false [testng] [2024-04-12 07:11:25,427] [main] testng.allow-missing = false [testng] [2024-04-12 07:11:25,427] [main] user.language = en [testng] [2024-04-12 07:11:25,427] [main] user.country = ${user.country} [testng] [2024-04-12 07:11:25,427] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-12 07:11:26,788] [main] ---------------------------------------- [testng] [2024-04-12 07:11:26,788] [main] Total files: 21 [testng] [2024-04-12 07:11:26,788] [main] Scan time: 1.361 s (64 ms/file) [testng] [2024-04-12 07:11:26,788] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-12 07:11:28,908] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 07:11:28,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:11:28,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:28,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-12_07-11-28.log] [testng] 07:11:28,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@757b981e - End of configuration. [testng] [2024-04-12 07:11:28,960] [pool-1-thread-12] Initializing /data/stefan/001_q09.txt: [testng] 07:11:28,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:11:28,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:28,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-12_07-11-28.log] [testng] 07:11:28,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c879d77 - End of configuration. [testng] [2024-04-12 07:11:29,028] [pool-1-thread-11] Initializing /data/stefan/001_q10.txt: [testng] 07:11:29,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:11:29,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-12_07-11-29.log] [testng] 07:11:29,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c8b9fa1 - End of configuration. [testng] [2024-04-12 07:11:29,093] [pool-1-thread-10] Initializing /data/stefan/001_q14.txt: [testng] 07:11:29,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:11:29,093 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,094 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-12_07-11-29.log] [testng] 07:11:29,094 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d514b84 - End of configuration. [testng] [2024-04-12 07:11:29,132] [pool-1-thread-9] Initializing /data/stefan/001_q11.txt: [testng] 07:11:29,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:11:29,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-12_07-11-29.log] [testng] 07:11:29,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1613a885 - End of configuration. [testng] [2024-04-12 07:11:29,190] [pool-1-thread-8] Initializing /data/stefan/001_q01.txt: [testng] 07:11:29,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:11:29,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-12_07-11-29.log] [testng] 07:11:29,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4df423c3 - End of configuration. [testng] [2024-04-12 07:11:29,220] [pool-1-thread-7] Initializing /data/stefan/001_q03.txt: [testng] 07:11:29,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:11:29,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-12_07-11-29.log] [testng] 07:11:29,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75af175e - End of configuration. [testng] [2024-04-12 07:11:29,249] [pool-1-thread-6] Initializing /data/stefan/001_q08.txt: [testng] 07:11:29,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:11:29,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,250 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-12_07-11-29.log] [testng] 07:11:29,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182ec13a - End of configuration. [testng] [2024-04-12 07:11:29,313] [pool-1-thread-5] Initializing /data/stefan/001_q04.txt: [testng] 07:11:29,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:11:29,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,313 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-12_07-11-29.log] [testng] 07:11:29,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ed753d - End of configuration. [testng] [2024-04-12 07:11:29,343] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt: [testng] 07:11:29,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:11:29,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-12_07-11-29.log] [testng] 07:11:29,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2e6908 - End of configuration. [testng] [2024-04-12 07:11:29,389] [pool-1-thread-3] Initializing /data/stefan/001_q06.txt: [testng] 07:11:29,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:11:29,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,390 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-12_07-11-29.log] [testng] 07:11:29,390 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a38dfe6 - End of configuration. [testng] [2024-04-12 07:11:29,415] [pool-1-thread-2] Initializing /data/stefan/001_q02.txt: [testng] 07:11:29,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:11:29,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:29,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-12_07-11-29.log] [testng] 07:11:29,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@266f3005 - End of configuration. [testng] [2024-04-12 07:11:31,899] [pool-1-thread-7] Initializing /data/stefan/001_q16.txt: [testng] [2024-04-12 07:11:31,935] [pool-1-thread-10] Initializing /data/stefan/001_q17.txt: [testng] [2024-04-12 07:11:32,007] [pool-1-thread-4] Initializing /data/stefan/001_q12.txt: [testng] [2024-04-12 07:11:32,068] [pool-1-thread-6] Initializing /data/stefan/001_q07.txt: [testng] [2024-04-12 07:11:32,135] [pool-1-thread-12] Initializing /data/stefan/001_q05.txt: [testng] [2024-04-12 07:11:32,157] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS