Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17349149107967193806.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42443_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:03,288 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:03,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:22:03,289 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,290 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:03,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:03,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:03,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:03,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:03,292 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:03,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:03,293 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:03,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:03,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:03,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:03,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:03,484 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:03,485 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:03,485 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:03,485 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:03,485 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:22:03,486 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:22:03,486 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 00:22:03,495] [main] java.version = 17.0.2 [testng] 00:22:03,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:03,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:03,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-22-03.log] [testng] 00:22:03,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 00:22:03,542] [main] testng.directory = /data [testng] [2024-11-27 00:22:03,542] [main] testng.configDirectory = /config [testng] [2024-11-27 00:22:03,550] [main] testng.multiplier = 1.0 [testng] [2024-11-27 00:22:03,551] [main] testng.in-memory = false [testng] [2024-11-27 00:22:03,551] [main] testng.allow-missing = false [testng] [2024-11-27 00:22:03,551] [main] user.language = en [testng] [2024-11-27 00:22:03,552] [main] user.country = ${user.country} [testng] [2024-11-27 00:22:03,552] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 00:22:22,196] [main] ---------------------------------------- [testng] [2024-11-27 00:22:22,197] [main] Total files: 315 [testng] [2024-11-27 00:22:22,197] [main] Scan time: 18.644 s (59 ms/file) [testng] [2024-11-27 00:22:22,197] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 192 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 00:34:43,445] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] 00:34:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:34:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:43,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-34-43.log] [testng] 00:34:43,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c7aedf5 - End of configuration. [testng] [2024-11-27 00:34:43,933] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] 00:34:43,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:34:43,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:43,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-34-43.log] [testng] 00:34:43,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661aa2c0 - End of configuration. [testng] [2024-11-27 00:34:44,634] [pool-1-thread-11] Initializing /data/public/etienne/venus stack.oir: [testng] 00:34:44,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:34:44,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:44,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-34-44.log] [testng] 00:34:44,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa61652 - End of configuration. [testng] [2024-11-27 00:34:45,342] [pool-1-thread-10] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] 00:34:45,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:34:45,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:45,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-34-45.log] [testng] 00:34:45,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eff7860 - End of configuration. [testng] [2024-11-27 00:34:45,835] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] 00:34:45,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:34:45,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:45,836 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-34-45.log] [testng] 00:34:45,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17aee2b1 - End of configuration. [testng] [2024-11-27 00:34:46,898] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] 00:34:46,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:34:46,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:46,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-34-46.log] [testng] 00:34:46,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c736ec3 - End of configuration. [testng] [2024-11-27 00:34:47,784] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 00:34:47,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:34:47,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:47,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-34-47.log] [testng] 00:34:47,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c7302d6 - End of configuration. [testng] [2024-11-27 00:34:48,274] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 00:34:48,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:34:48,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:48,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-34-48.log] [testng] 00:34:48,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4011570 - End of configuration. [testng] [2024-11-27 00:34:48,870] [pool-1-thread-5] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] 00:34:48,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:34:48,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:48,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-34-48.log] [testng] 00:34:48,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ed48ef - End of configuration. [testng] [2024-11-27 00:34:49,475] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 00:34:49,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:34:49,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:49,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-34-49.log] [testng] 00:34:49,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37af0d6a - End of configuration. [testng] [2024-11-27 00:34:50,025] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] 00:34:50,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:34:50,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:50,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-34-50.log] [testng] 00:34:50,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665176a - End of configuration. [testng] [2024-11-27 00:34:50,541] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] 00:34:50,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:34:50,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:34:50,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-34-50.log] [testng] 00:34:50,542 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1344a6a4 - End of configuration. [testng] [2024-11-27 00:35:19,468] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-11-27 00:35:20,029] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-11-27 00:35:21,210] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-11-27 00:35:22,063] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-11-27 00:35:23,232] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-11-27 00:35:23,686] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-11-27 00:35:24,508] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-11-27 00:35:25,322] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-11-27 00:35:25,879] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-11-27 00:35:31,739] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-11-27 00:35:33,384] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-11-27 00:35:34,297] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-11-27 00:35:36,042] [pool-1-thread-6] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-11-27 00:35:36,551] [pool-1-thread-7] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-11-27 00:35:37,847] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-11-27 00:35:38,954] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-11-27 00:35:39,630] [pool-1-thread-10] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-11-27 00:35:40,311] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-11-27 00:35:40,958] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-11-27 00:35:41,453] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-11-27 00:35:44,983] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-11-27 00:35:46,948] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-11-27 00:35:49,361] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-11-27 00:35:49,994] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-11-27 00:35:50,736] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-11-27 00:35:51,310] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-11-27 00:35:51,983] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-11-27 00:35:53,418] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-11-27 00:35:57,128] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-11-27 00:35:57,941] [pool-1-thread-8] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-11-27 00:35:58,557] [pool-1-thread-5] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-11-27 00:35:58,607] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-11-27 00:36:01,035] [pool-1-thread-5] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-11-27 00:36:03,616] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-11-27 00:36:04,368] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-11-27 00:36:05,488] [pool-1-thread-10] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-11-27 00:36:06,512] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-11-27 00:36:07,106] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-11-27 00:36:10,812] [pool-1-thread-6] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-11-27 00:36:12,460] [pool-1-thread-4] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-11-27 00:36:13,665] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-11-27 00:36:14,909] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-11-27 00:36:16,352] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-11-27 00:36:18,950] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-11-27 00:36:20,038] [pool-1-thread-11] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-11-27 00:36:20,538] [pool-1-thread-1] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-11-27 00:36:23,800] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-11-27 00:36:24,367] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-11-27 00:36:26,287] [pool-1-thread-4] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-11-27 00:36:28,352] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-11-27 00:36:29,830] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-11-27 00:36:31,259] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-11-27 00:36:32,430] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-11-27 00:36:33,319] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-11-27 00:36:35,383] [pool-1-thread-6] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-11-27 00:36:39,828] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-11-27 00:36:41,762] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-11-27 00:36:43,090] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-11-27 00:36:43,759] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-11-27 00:36:45,431] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-11-27 00:36:47,017] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-11-27 00:36:47,677] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-11-27 00:36:48,186] [pool-1-thread-6] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-11-27 00:36:51,161] [pool-1-thread-10] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-11-27 00:36:54,055] [pool-1-thread-4] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-11-27 00:36:56,639] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-11-27 00:36:57,102] [pool-1-thread-11] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-11-27 00:36:58,069] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-11-27 00:36:58,501] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-11-27 00:36:59,085] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-11-27 00:36:59,582] [pool-1-thread-6] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-11-27 00:37:02,212] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-11-27 00:37:03,339] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-11-27 00:37:03,916] [pool-1-thread-10] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-11-27 00:37:07,603] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-11-27 00:37:08,133] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-11-27 00:37:09,073] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-11-27 00:37:10,216] [pool-1-thread-10] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-11-27 00:37:11,191] [pool-1-thread-6] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-11-27 00:37:13,128] [pool-1-thread-8] Initializing /data/olympus/XYZt.vsi: [testng] [2024-11-27 00:37:13,613] [pool-1-thread-4] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-11-27 00:37:15,972] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-11-27 00:37:21,320] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-11-27 00:37:23,547] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-11-27 00:37:24,593] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-11-27 00:37:25,469] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-11-27 00:37:26,358] [pool-1-thread-8] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-11-27 00:37:28,106] [pool-1-thread-4] Initializing /data/qa-17270/image1.oir: [testng] [2024-11-27 00:37:31,164] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-11-27 00:37:32,583] [pool-1-thread-1] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-11-27 00:37:34,439] [pool-1-thread-10] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-11-27 00:37:39,319] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-11-27 00:37:44,533] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-11-27 00:37:45,661] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-11-27 00:37:46,486] [pool-1-thread-9] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-11-27 00:37:47,804] [pool-1-thread-1] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-11-27 00:37:49,854] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-11-27 00:37:52,914] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-11-27 00:37:55,677] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-11-27 00:37:56,461] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-11-27 00:37:58,895] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-11-27 00:38:01,179] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-11-27 00:38:02,908] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-11-27 00:38:04,380] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-11-27 00:38:05,022] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-11-27 00:38:06,424] [pool-1-thread-9] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-11-27 00:38:57,879] [pool-1-thread-1] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-11-27 00:38:58,466] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-11-27 00:38:58,928] [pool-1-thread-5] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-11-27 00:38:59,244] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-11-27 00:39:02,867] [pool-1-thread-3] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-11-27 00:39:04,458] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-11-27 00:39:06,092] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-11-27 00:39:08,497] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-11-27 00:39:09,387] [pool-1-thread-12] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-11-27 00:39:10,290] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-11-27 00:39:11,704] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-11-27 00:39:32,237] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-11-27 00:39:33,732] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-27 00:39:34,794] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-11-27 00:39:35,648] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-11-27 00:39:38,716] [pool-1-thread-1] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-11-27 00:39:40,615] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-11-27 00:39:42,274] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-11-27 00:39:46,829] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-11-27 00:39:47,834] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-11-27 00:39:48,354] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-11-27 00:39:52,951] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-11-27 00:39:53,423] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-11-27 00:39:54,397] [pool-1-thread-5] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-11-27 00:39:54,865] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-11-27 00:39:56,439] [pool-1-thread-7] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-11-27 00:39:58,509] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-11-27 00:40:00,305] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-11-27 00:40:01,581] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-11-27 00:40:02,863] [pool-1-thread-1] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-11-27 00:40:03,343] [pool-1-thread-5] Initializing /data/qa-17270/stack1.oir: [testng] [2024-11-27 00:40:07,413] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-11-27 00:40:09,203] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-11-27 00:40:09,755] [pool-1-thread-1] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-11-27 00:40:10,581] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-11-27 00:40:14,426] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-11-27 00:40:14,965] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-11-27 00:40:15,469] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-11-27 00:40:15,767] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-11-27 00:40:17,163] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-11-27 00:40:20,362] [pool-1-thread-2] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-11-27 00:40:25,419] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-11-27 00:40:27,002] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-11-27 00:40:27,719] [pool-1-thread-7] Initializing /data/olympus/XYZt.oir: [testng] [2024-11-27 00:40:29,220] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-11-27 00:40:29,929] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-11-27 00:40:30,912] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-11-27 00:40:37,293] [pool-1-thread-1] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-11-27 00:40:38,107] [pool-1-thread-8] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-11-27 00:40:42,194] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-11-27 00:40:45,182] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] [2024-11-27 00:41:12,506] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-11-27 00:41:18,690] [pool-1-thread-5] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-11-27 00:41:21,428] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-11-27 00:41:25,316] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-11-27 00:41:30,298] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-11-27 00:41:36,289] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-11-27 00:41:42,042] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-11-27 00:41:53,288] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-11-27 00:41:56,362] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-11-27 00:41:59,315] [pool-1-thread-8] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-11-27 00:42:05,153] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-11-27 00:42:10,476] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-11-27 00:42:14,270] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-11-27 00:42:22,574] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-11-27 00:42:28,646] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-11-27 00:42:31,459] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-11-27 00:42:32,866] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-11-27 00:42:37,940] [pool-1-thread-5] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-11-27 00:42:44,825] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-11-27 00:42:48,054] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-11-27 00:43:01,314] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-11-27 00:43:06,417] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-11-27 00:43:07,291] [pool-1-thread-7] Initializing /data/qa-17335/1.oir: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10176, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 51 minutes 24 seconds Finished: SUCCESS