Started by upstream project "BIOFORMATS-test-repo" build number 269 originally caused by: Started by upstream project "Trigger" build number 292 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins16034894946052199326.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_42444_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:06,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:06,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:22:06,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:06,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:06,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:06,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:06,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:06,865 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:06,866 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:06,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:06,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:06,867 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:07,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:07,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:07,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:07,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:07,076 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:07,076 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:07,076 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:07,077 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:07,077 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:22:07,078 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:22:07,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-27 00:22:07,092] [main] java.version = 17.0.2 [testng] 00:22:07,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:07,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:07,150 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_00-22-07.log] [testng] 00:22:07,151 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-27 00:22:07,154] [main] testng.directory = /data [testng] [2024-11-27 00:22:07,154] [main] testng.configDirectory = /config [testng] [2024-11-27 00:22:07,164] [main] testng.multiplier = 1.0 [testng] [2024-11-27 00:22:07,165] [main] testng.in-memory = false [testng] [2024-11-27 00:22:07,165] [main] testng.allow-missing = false [testng] [2024-11-27 00:22:07,165] [main] user.language = en [testng] [2024-11-27 00:22:07,165] [main] user.country = ${user.country} [testng] [2024-11-27 00:22:07,165] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-27 00:22:57,857] [main] ---------------------------------------- [testng] [2024-11-27 00:22:57,858] [main] Total files: 4426 [testng] [2024-11-27 00:22:57,858] [main] Scan time: 50.691 s (11 ms/file) [testng] [2024-11-27 00:22:57,858] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-27 00:40:31,816] [pool-1-thread-1] Initializing /data/wayne/apple.tif: [testng] 00:40:31,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:40:31,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:31,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_00-40-31.log] [testng] 00:40:31,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53cfe35f - End of configuration. [testng] [2024-11-27 00:40:32,726] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z060.tif: [testng] 00:40:32,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:40:32,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:32,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_00-40-32.log] [testng] 00:40:32,727 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2379f1f0 - End of configuration. [testng] [2024-11-27 00:40:33,848] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z033.tif: [testng] 00:40:33,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:40:33,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:33,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_00-40-33.log] [testng] 00:40:33,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d144448 - End of configuration. [testng] [2024-11-27 00:40:34,851] [pool-1-thread-10] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] 00:40:34,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:40:34,851 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:34,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_00-40-34.log] [testng] 00:40:34,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ce73149 - End of configuration. [testng] [2024-11-27 00:40:36,670] [pool-1-thread-9] Initializing /data/curtis/test1.tiff: [testng] 00:40:36,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:40:36,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:36,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_00-40-36.log] [testng] 00:40:36,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57426f53 - End of configuration. [testng] [2024-11-27 00:40:38,027] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] 00:40:38,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:40:38,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:38,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_00-40-38.log] [testng] 00:40:38,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65399f6b - End of configuration. [testng] [2024-11-27 00:40:38,795] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x32.tiff: [testng] 00:40:38,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:40:38,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:38,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_00-40-38.log] [testng] 00:40:38,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79548bee - End of configuration. [testng] [2024-11-27 00:40:39,450] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] 00:40:39,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:40:39,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:39,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_00-40-39.log] [testng] 00:40:39,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bd9fc94 - End of configuration. [testng] [2024-11-27 00:40:40,078] [pool-1-thread-5] Initializing /data/ascb/CYT-35_FriendOsmiumEpididymis_4800.tif: [testng] 00:40:40,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:40:40,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:40,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_00-40-40.log] [testng] 00:40:40,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe6d3bf - End of configuration. [testng] [2024-11-27 00:40:40,719] [pool-1-thread-4] Initializing /data/josiah/cell-Z34.C0.tiff: [testng] 00:40:40,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:40:40,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:40,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_00-40-40.log] [testng] 00:40:40,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56761f6e - End of configuration. [testng] [2024-11-27 00:40:41,418] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] 00:40:41,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:40:41,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:41,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_00-40-41.log] [testng] 00:40:41,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3685f1a1 - End of configuration. [testng] [2024-11-27 00:40:42,095] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 00:40:42,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:40:42,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:40:42,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_00-40-42.log] [testng] 00:40:42,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100e52cf - End of configuration. [testng] [2024-11-27 00:40:50,958] [pool-1-thread-9] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-11-27 00:40:51,828] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-11-27 00:40:52,257] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-11-27 00:40:52,859] [pool-1-thread-2] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-11-27 00:40:53,492] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-11-27 00:40:54,131] [pool-1-thread-4] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2024-11-27 00:40:54,768] [pool-1-thread-8] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-11-27 00:41:01,810] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] [2024-11-27 00:41:02,542] [pool-1-thread-3] Initializing /data/josiah/cell-Z28.C0.tiff: [testng] [2024-11-27 00:41:03,303] [pool-1-thread-12] Initializing /data/curtis/imagesEight.tiff: [testng] [2024-11-27 00:41:04,250] [pool-1-thread-1] Initializing /data/martin/head.tif: [testng] [2024-11-27 00:41:05,871] [pool-1-thread-5] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-11-27 00:41:11,787] [pool-1-thread-7] Initializing /data/samples/melissa/imagej-last-ifd/Rat_Hippocampal_Neuron.tif: [testng] [2024-11-27 00:41:14,829] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2024-11-27 00:41:16,188] [pool-1-thread-1] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-11-27 00:41:17,157] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-11-27 00:41:18,068] [pool-1-thread-3] Initializing /data/kevino/_BF_00004.tif: [testng] [2024-11-27 00:41:19,035] [pool-1-thread-4] Initializing /data/wayne/Rockies-48bit-rgb.tif: [testng] [2024-11-27 00:41:19,984] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-11-27 00:41:20,940] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-11-27 00:41:21,860] [pool-1-thread-2] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2024-11-27 00:41:26,157] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-11-27 00:41:27,348] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-11-27 00:41:41,656] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z017.tif: [testng] [2024-11-27 00:41:45,012] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-11-27 00:41:47,252] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-11-27 00:41:49,075] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-11-27 00:41:51,883] [pool-1-thread-3] Initializing /data/qa-4745/LIBPB476_Figure 1_H_NA_21879.tiff: [testng] [2024-11-27 00:41:54,397] [pool-1-thread-5] Initializing /data/marc/ball48_original_10x.tif: [testng] [2024-11-27 00:41:55,493] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2024-11-27 00:41:57,307] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2024-11-27 00:41:59,672] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-11-27 00:42:01,908] [pool-1-thread-1] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-11-27 00:42:13,569] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo.tif: [testng] [2024-11-27 00:42:16,036] [pool-1-thread-8] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-11-27 00:42:18,289] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z045.tif: [testng] [2024-11-27 00:42:23,747] [pool-1-thread-6] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-11-27 00:42:26,373] [pool-1-thread-9] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-11-27 00:42:28,544] [pool-1-thread-1] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2024-11-27 00:42:31,349] [pool-1-thread-3] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-11-27 00:42:33,977] [pool-1-thread-12] Initializing /data/josiah/cell-Z24.C1.tiff: [testng] [2024-11-27 00:42:36,326] [pool-1-thread-4] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2024-11-27 00:42:37,718] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] [2024-11-27 00:42:39,929] [pool-1-thread-10] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-11-27 00:42:51,770] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x64.tiff: [testng] [2024-11-27 00:42:53,896] [pool-1-thread-7] Initializing 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[testng] [2024-11-27 00:54:49,748] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-11-27 00:54:52,130] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] [2024-11-27 00:54:52,768] [pool-1-thread-12] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2024-11-27 00:54:53,231] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-11-27 00:54:53,695] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2024-11-27 00:54:54,767] [pool-1-thread-3] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-11-27 00:54:56,635] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-11-27 00:54:57,448] [pool-1-thread-5] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-11-27 00:54:58,557] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z018.tif: 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00:55:23,626] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-11-27 00:55:27,949] [pool-1-thread-9] Initializing /data/ascb/FND-1_PorterClaudeFullamFirst_4800.tif: [testng] [2024-11-27 00:55:28,891] [pool-1-thread-4] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2024-11-27 00:55:30,150] [pool-1-thread-11] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-11-27 00:55:30,737] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0254.TIF: [testng] [2024-11-27 00:55:31,394] [pool-1-thread-5] Initializing /data/stephane/F3L1A_DNA 2.tif: [testng] [2024-11-27 00:55:32,384] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-11-27 00:55:33,493] [pool-1-thread-7] Initializing /data/julien/RobertOrti.TIF: [testng] [2024-11-27 00:55:35,023] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-11-27 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[pool-1-thread-10] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] [2024-11-27 00:55:55,840] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z001.tif: [testng] [2024-11-27 00:55:56,906] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0257.TIF: [testng] [2024-11-27 00:55:58,924] [pool-1-thread-6] Initializing /data/misc/mri-old.mov: [testng] [2024-11-27 00:55:59,265] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2024-11-27 00:56:00,228] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0216.TIF: [testng] [2024-11-27 00:56:01,026] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-11-27 00:56:01,733] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2024-11-27 00:56:02,634] [pool-1-thread-5] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-11-27 00:56:03,703] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z030.tif: [testng] [2024-11-27 00:56:06,306] [pool-1-thread-11] Initializing /data/josiah/cell-Z32.C1.tiff: [testng] [2024-11-27 00:56:08,462] [pool-1-thread-6] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-11-27 00:56:13,368] [pool-1-thread-3] Initializing /data/tobias/test002_1.tif: [testng] [2024-11-27 00:56:14,460] [pool-1-thread-2] Initializing /data/josiah/cell-Z39.C0.tiff: [testng] [2024-11-27 00:56:16,504] [pool-1-thread-4] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-11-27 00:56:19,648] [pool-1-thread-8] Initializing /data/public/condensation/C4.pattern9.tif: [testng] [2024-11-27 00:56:20,677] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-11-27 00:56:21,922] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs016.TIF: [testng] [2024-11-27 00:56:22,921] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] [2024-11-27 00:56:23,890] [pool-1-thread-7] Initializing 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[testng] [2024-11-27 00:56:41,550] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-11-27 00:56:42,641] [pool-1-thread-12] Initializing /data/curtis/map/the-quick: [testng] [2024-11-27 00:56:43,620] [pool-1-thread-10] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-11-27 00:56:44,610] [pool-1-thread-5] Initializing /data/kevino/_BF_00005.tif: [testng] [2024-11-27 00:56:46,908] [pool-1-thread-11] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-11-27 00:56:50,362] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2024-11-27 00:56:53,931] [pool-1-thread-4] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2024-11-27 00:56:55,152] [pool-1-thread-2] Initializing /data/ascb/CYT-50_FriendSecretoryPairA_4800.tif: [testng] [2024-11-27 00:56:57,749] [pool-1-thread-8] Initializing /data/josiah/cell-Z30.C1.tiff: [testng] [2024-11-27 00:56:59,100] [pool-1-thread-12] Initializing /data/damian/12m.tiff: [testng] [2024-11-27 00:57:00,190] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x32.tiff: [testng] [2024-11-27 00:57:01,286] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z019.tif: [testng] [2024-11-27 00:57:02,211] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x48.tiff: [testng] [2024-11-27 00:57:03,254] [pool-1-thread-1] Initializing /data/public/libtiff/cramps-tile.tif: [testng] [2024-11-27 00:57:05,112] [pool-1-thread-3] Initializing /data/brian/Alx-488-pk.tif: [testng] [2024-11-27 00:57:06,151] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-11-27 00:57:08,428] [pool-1-thread-6] Initializing /data/edward/TestDoc2.tif: [testng] [2024-11-27 00:57:09,573] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z001.tif: [testng] [2024-11-27 00:57:13,375] [pool-1-thread-4] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-11-27 00:57:16,772] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z055.tif: [testng] [2024-11-27 00:57:18,182] [pool-1-thread-9] Initializing /data/boguslaw/Arabidopsis.tiff: [testng] [2024-11-27 00:57:19,552] [pool-1-thread-3] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-11-27 00:57:20,921] [pool-1-thread-7] Initializing /data/wayne/screen-rgb.tiff: [testng] [2024-11-27 00:57:22,090] [pool-1-thread-12] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-11-27 00:57:23,173] [pool-1-thread-8] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-11-27 00:57:24,452] [pool-1-thread-2] Initializing /data/josiah/cell-Z15.C0.tiff: [testng] [2024-11-27 00:57:26,070] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z044.tif: [testng] [2024-11-27 00:57:27,428] [pool-1-thread-1] Initializing /data/josiah/cell-Z4.C1.tiff: [testng] [2024-11-27 00:57:33,206] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2024-11-27 00:57:35,786] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-11-27 00:57:37,205] [pool-1-thread-5] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2024-11-27 00:57:38,779] [pool-1-thread-6] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-11-27 00:57:40,213] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x16.tiff: [testng] [2024-11-27 00:57:41,612] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-11-27 00:57:43,012] [pool-1-thread-10] Initializing /data/samples/melissa/imagej-4gb/4gb-test&sizeX=1024&sizeY=1024&pixelType=uint16&sizeC=2050.fake: [testng] [2024-11-27 00:57:48,449] [pool-1-thread-1] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-11-27 00:57:50,068] [pool-1-thread-2] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-11-27 00:57:53,774] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP4.tiff: [testng] [2024-11-27 00:57:55,362] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-11-27 00:57:58,149] [pool-1-thread-4] Initializing /data/josiah/cell-Z19.C0.tiff: [testng] [2024-11-27 00:57:59,937] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-11-27 00:58:03,653] [pool-1-thread-10] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-11-27 00:58:05,573] [pool-1-thread-6] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-11-27 00:58:07,537] [pool-1-thread-7] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-11-27 00:58:09,252] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-11-27 00:58:10,784] [pool-1-thread-5] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-11-27 00:58:17,966] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-11-27 00:58:19,675] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-11-27 00:58:21,797] [pool-1-thread-9] Initializing /data/samples/melissa/long8-subfiletype/Cell_Colony.tif: [testng] [2024-11-27 00:58:23,518] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x48.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 minutes 45 seconds Finished: SUCCESS