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Started by upstream project "BIOFORMATS-test-repo" build number 32 originally caused by: Started by upstream project "Trigger" build number 36 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins7862681658788915823.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_4248_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:20:55,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:55,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:20:55,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:55,359 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:55,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:55,360 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:55,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:55,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:55,361 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:55,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:55,362 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:55,363 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:55,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:55,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:55,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:55,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:55,614 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:55,614 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:55,614 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:55,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:55,615 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:20:55,616 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:20:55,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-13 01:20:55,630] [main] java.version = 11.0.16 [testng] 01:20:55,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:55,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:55,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-13_01-20-55.log] [testng] 01:20:55,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-13 01:20:55,686] [main] testng.directory = /data [testng] [2024-04-13 01:20:55,686] [main] testng.configDirectory = /config [testng] [2024-04-13 01:20:55,698] [main] testng.multiplier = 1.0 [testng] [2024-04-13 01:20:55,699] [main] testng.in-memory = false [testng] [2024-04-13 01:20:55,699] [main] testng.allow-missing = false [testng] [2024-04-13 01:20:55,699] [main] user.language = en [testng] [2024-04-13 01:20:55,699] [main] user.country = ${user.country} [testng] [2024-04-13 01:20:55,699] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-13 01:21:08,084] [main] ---------------------------------------- [testng] [2024-04-13 01:21:08,085] [main] Total files: 4424 [testng] [2024-04-13 01:21:08,085] [main] Scan time: 12.385 s (2 ms/file) [testng] [2024-04-13 01:21:08,085] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-13 01:23:22,638] [pool-1-thread-1] Initializing /data/bene/3d-example-stack.tif: [testng] 01:23:22,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:22,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-13_01-23-22.log] [testng] 01:23:22,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1223dd9 - End of configuration. [testng] [2024-04-13 01:23:22,746] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z058.tif: [testng] 01:23:22,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:22,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-13_01-23-22.log] [testng] 01:23:22,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@477825c2 - End of configuration. [testng] [2024-04-13 01:23:22,783] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] 01:23:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:22,783 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,784 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-13_01-23-22.log] [testng] 01:23:22,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47910ead - End of configuration. [testng] [2024-04-13 01:23:22,810] [pool-1-thread-10] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] 01:23:22,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:22,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-13_01-23-22.log] [testng] 01:23:22,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e6cb9f - End of configuration. [testng] [2024-04-13 01:23:22,847] [pool-1-thread-9] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] 01:23:22,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:22,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-13_01-23-22.log] [testng] 01:23:22,849 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fd116f1 - End of configuration. [testng] [2024-04-13 01:23:22,887] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0210.TIF: [testng] 01:23:22,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:22,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-13_01-23-22.log] [testng] 01:23:22,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fe1eed7 - End of configuration. [testng] [2024-04-13 01:23:22,964] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z003.tif: [testng] 01:23:22,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:22,965 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,965 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-13_01-23-22.log] [testng] 01:23:22,966 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fdaaecd - End of configuration. [testng] [2024-04-13 01:23:22,998] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/RGB from I5D.tif: [testng] 01:23:22,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:22,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:22,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-13_01-23-22.log] [testng] 01:23:22,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5975e07a - End of configuration. [testng] [2024-04-13 01:23:23,059] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs006.TIF: [testng] 01:23:23,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:23,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:23,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-13_01-23-23.log] [testng] 01:23:23,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d7254df - End of configuration. [testng] [2024-04-13 01:23:23,134] [pool-1-thread-4] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] 01:23:23,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:23,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:23,135 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-13_01-23-23.log] [testng] 01:23:23,135 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c773970 - End of configuration. [testng] [2024-04-13 01:23:23,171] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z004.tif: [testng] 01:23:23,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:23,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:23,172 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-13_01-23-23.log] [testng] 01:23:23,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b43e72 - End of configuration. [testng] [2024-04-13 01:23:23,208] [pool-1-thread-2] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: [testng] 01:23:23,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:23,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:23,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-13_01-23-23.log] [testng] 01:23:23,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7329199b - End of configuration. [testng] [2024-04-13 01:23:27,394] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z025.tif: [testng] [2024-04-13 01:23:27,681] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-04-13 01:23:27,709] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z048.tif: [testng] [2024-04-13 01:23:27,939] [pool-1-thread-4] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-04-13 01:23:27,970] [pool-1-thread-9] Initializing /data/ascb/FND-13_PorterFranziniTransverse_4800.tif: [testng] [2024-04-13 01:23:30,609] [pool-1-thread-1] Initializing /data/alexa/test4.tif: [testng] [2024-04-13 01:23:30,635] [pool-1-thread-7] Initializing /data/brian/MFGTMP_080902150001t001B02f73d2.TIF: [testng] [2024-04-13 01:23:30,677] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-04-13 01:23:30,698] [pool-1-thread-6] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-04-13 01:23:30,815] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z011.tif: [testng] [2024-04-13 01:23:31,206] [pool-1-thread-8] Initializing /data/ascb/CYT-31_FriendOsmium_4800.tif: [testng] [2024-04-13 01:23:31,254] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-13 01:23:31,338] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-04-13 01:23:31,383] [pool-1-thread-12] Initializing /data/jonathan/XSEC-02.TIF: [testng] [2024-04-13 01:23:31,682] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2024-04-13 01:23:31,722] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z054.tif: [testng] [2024-04-13 01:23:31,777] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-04-13 01:23:31,894] [pool-1-thread-4] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-04-13 01:23:32,379] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] [2024-04-13 01:23:32,443] [pool-1-thread-11] Initializing /data/damian/21m.tiff: [testng] [2024-04-13 01:23:32,544] [pool-1-thread-7] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2024-04-13 01:23:32,587] [pool-1-thread-12] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-04-13 01:23:32,869] [pool-1-thread-10] Initializing /data/brian/retina/retina_C0_Z038.tif: [testng] [2024-04-13 01:23:32,895] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z026.tif: [testng] [2024-04-13 01:23:33,046] [pool-1-thread-5] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-04-13 01:23:33,355] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z030.tif: [testng] [2024-04-13 01:23:33,389] [pool-1-thread-4] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-04-13 01:23:33,443] [pool-1-thread-11] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-04-13 01:23:33,683] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z027.tif: [testng] [2024-04-13 01:23:33,793] [pool-1-thread-10] Initializing /data/ascb/bad/FND-19_FawcettPhillipsSuccessive_4800.tif: [testng] [2024-04-13 01:23:33,852] [pool-1-thread-7] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-04-13 01:23:33,882] [pool-1-thread-1] Initializing /data/public/libtiff/cramps.tif: [testng] [2024-04-13 01:23:34,341] [pool-1-thread-6] Initializing /data/ascb/CYT-77_PasolliMouse2_4800.tif: [testng] [2024-04-13 01:23:34,455] [pool-1-thread-3] Initializing /data/brian/MFGTMP_080902150001t001B02f73d1.TIF: [testng] [2024-04-13 01:23:34,518] [pool-1-thread-12] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-04-13 01:23:34,621] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2024-04-13 01:23:34,878] [pool-1-thread-7] Initializing 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[pool-1-thread-4] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-04-13 01:25:36,663] [pool-1-thread-8] Initializing /data/public/condensation/E4.pattern9.tif: [testng] [2024-04-13 01:25:36,721] [pool-1-thread-6] Initializing /data/curtis/map/the-quick: [testng] [2024-04-13 01:25:36,782] [pool-1-thread-12] Initializing /data/pavel/Dmel/spim.pattern: [testng] [2024-04-13 01:25:38,089] [pool-1-thread-2] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2024-04-13 01:25:38,316] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-04-13 01:25:38,487] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] [2024-04-13 01:25:38,645] [pool-1-thread-6] Initializing /data/josiah/cell-Z17.C0.tiff: [testng] [2024-04-13 01:25:38,685] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z035.tif: [testng] [2024-04-13 01:25:38,835] [pool-1-thread-9] Initializing 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Initializing /data/lzw/test.tif: [testng] [2024-04-13 01:25:40,147] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2024-04-13 01:25:40,410] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-04-13 01:25:40,436] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z031.tif: [testng] [2024-04-13 01:25:40,465] [pool-1-thread-5] Initializing /data/josh/ZProjection of stack.tif: [testng] [2024-04-13 01:25:40,515] [pool-1-thread-6] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-13 01:25:43,237] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-04-13 01:25:43,500] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] [2024-04-13 01:25:43,613] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-04-13 01:25:43,793] [pool-1-thread-8] Initializing 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Initializing /data/tom-kazimiers/test_noexiftool.tiff: [testng] [2024-04-13 01:25:45,754] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2024-04-13 01:25:45,953] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-04-13 01:25:45,983] [pool-1-thread-9] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-13 01:25:46,072] [pool-1-thread-8] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-04-13 01:25:46,141] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z036.tif: [testng] [2024-04-13 01:25:46,170] [pool-1-thread-5] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2024-04-13 01:25:46,812] [pool-1-thread-1] Initializing /data/public/condensation/A5.pattern2.tif: [testng] [2024-04-13 01:25:46,906] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-04-13 01:25:46,934] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z018.tif: [testng] [2024-04-13 01:25:47,341] [pool-1-thread-4] Initializing /data/public/libtiff/jim___gg.tif: [testng] [2024-04-13 01:25:47,466] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z017.tif: [testng] [2024-04-13 01:25:47,636] [pool-1-thread-8] Initializing /data/misc/ms-paint.png: [testng] [2024-04-13 01:25:47,709] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z009.tif: [testng] [2024-04-13 01:25:47,760] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-04-13 01:25:48,104] [pool-1-thread-7] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-04-13 01:25:48,463] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z000.tif: [testng] [2024-04-13 01:25:48,503] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] [2024-04-13 01:25:48,867] [pool-1-thread-1] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-04-13 01:25:49,017] [pool-1-thread-8] Initializing /data/damian/18m.tiff: [testng] [2024-04-13 01:25:49,045] [pool-1-thread-4] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-04-13 01:25:49,431] [pool-1-thread-7] Initializing /data/josiah/cell-Z5.C0.tiff: [testng] [2024-04-13 01:25:49,482] [pool-1-thread-8] Initializing /data/big-images/2kx2k.tif: [testng] [2024-04-13 01:25:49,779] [pool-1-thread-4] Initializing /data/josh/NESb_C2_TP6.tiff: [testng] [2024-04-13 01:25:49,948] [pool-1-thread-7] Initializing /data/jeff/test36b.tif: [testng] [2024-04-13 01:25:50,308] [pool-1-thread-7] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-04-13 01:25:50,746] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-04-13 01:25:50,994] [pool-1-thread-4] Initializing /data/stephane/P014.tif: [testng] [2024-04-13 01:25:51,087] [pool-1-thread-7] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-04-13 01:25:51,113] [pool-1-thread-12] Initializing /data/curtis/itk/MG63_0_1.tif: [testng] [2024-04-13 01:25:51,681] [pool-1-thread-4] Initializing /data/curtis/test1.tiff: [testng] [2024-04-13 01:25:51,827] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-04-13 01:25:51,938] [pool-1-thread-7] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-04-13 01:25:52,012] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z005.tif: [testng] [2024-04-13 01:25:52,050] [pool-1-thread-4] Initializing /data/edward/TestDoc2.tif: [testng] [2024-04-13 01:25:52,184] [pool-1-thread-12] Initializing /data/public/condensation/C4.pattern8.tif: [testng] [2024-04-13 01:25:52,391] [pool-1-thread-8] Initializing /data/josiah/cell-Z38.C0.tiff: [testng] [2024-04-13 01:25:52,739] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] [2024-04-13 01:25:52,797] [pool-1-thread-10] Initializing /data/martin/head.tif: [testng] [2024-04-13 01:25:52,923] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-04-13 01:25:53,001] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-04-13 01:25:53,779] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-04-13 01:25:53,934] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z023.tif: [testng] [2024-04-13 01:25:54,036] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0233.TIF: [testng] [2024-04-13 01:25:54,115] [pool-1-thread-5] Initializing /data/public/condensation/A6.pattern3.tif: [testng] [2024-04-13 01:25:54,179] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0214.TIF: [testng] [2024-04-13 01:25:54,273] [pool-1-thread-3] Initializing /data/boguslaw/Arabidopsis_large.tif: [testng] [2024-04-13 01:25:55,299] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-04-13 01:25:55,454] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-04-13 01:25:55,595] [pool-1-thread-5] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-04-13 01:25:55,761] [pool-1-thread-7] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-04-13 01:25:55,850] [pool-1-thread-8] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] [2024-04-13 01:25:55,918] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z026.tif: [testng] [2024-04-13 01:25:55,986] [pool-1-thread-12] Initializing /data/josiah/cell-Z34.C1.tiff: [testng] [2024-04-13 01:25:56,157] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0255.TIF: [testng] [2024-04-13 01:25:56,465] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2024-04-13 01:25:56,544] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z047.tif: [testng] [2024-04-13 01:25:56,739] [pool-1-thread-10] Initializing /data/ascb/FND-25_PaladeGroup_4800.tif: [testng] [2024-04-13 01:25:56,950] [pool-1-thread-12] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-04-13 01:25:57,115] [pool-1-thread-4] Initializing /data/josiah/cell-Z26.C1.tiff: [testng] [2024-04-13 01:25:57,174] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-04-13 01:25:57,449] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-04-13 01:25:57,557] [pool-1-thread-7] Initializing /data/samples/cielab/Ski_TC8-03_ROMM_lab.tif: [testng] [2024-04-13 01:25:57,629] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z042.tif: [testng] [2024-04-13 01:25:57,809] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2024-04-13 01:25:57,975] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-04-13 01:25:58,243] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z029.tif: [testng] [2024-04-13 01:25:58,285] [pool-1-thread-8] Initializing /data/curtis/clown.tif: [testng] [2024-04-13 01:25:58,583] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-04-13 01:25:58,619] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-04-13 01:25:58,832] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-04-13 01:25:58,952] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z001.tif: [testng] [2024-04-13 01:25:59,023] [pool-1-thread-8] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-04-13 01:25:59,374] [pool-1-thread-4] Initializing /data/misc/mri-stack.tif: [testng] [2024-04-13 01:25:59,479] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z060.tif: [testng] [2024-04-13 01:25:59,807] [pool-1-thread-3] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2024-04-13 01:25:59,946] [pool-1-thread-4] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-04-13 01:25:59,990] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2024-04-13 01:26:00,270] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-04-13 01:26:00,401] [pool-1-thread-4] Initializing /data/ascb/CYT-149_Fader_Fusion.tif: [testng] [2024-04-13 01:26:00,625] [pool-1-thread-8] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2024-04-13 01:26:01,003] [pool-1-thread-3] Initializing /data/harvey/NR_Giemsa_Sag_CTb_Retina_02.tif: [testng] [2024-04-13 01:26:01,306] [pool-1-thread-8] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-04-13 01:26:02,307] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z002.tif: [testng] [2024-04-13 01:26:02,683] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-04-13 01:26:03,008] [pool-1-thread-5] Initializing /data/josiah/cell-Z12.C0.tiff: [testng] [2024-04-13 01:26:03,167] [pool-1-thread-10] Initializing /data/curtis/images24.tiff: [testng] [2024-04-13 01:26:03,394] [pool-1-thread-3] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-04-13 01:26:03,443] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs000.TIF: [testng] [2024-04-13 01:26:03,711] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] [2024-04-13 01:26:03,789] [pool-1-thread-12] Initializing /data/public/libtiff/ycbcr-cat.tif: [testng] [2024-04-13 01:26:03,850] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-01.tiff: [testng] [2024-04-13 01:26:04,039] [pool-1-thread-8] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-04-13 01:26:04,360] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0212.TIF: [testng] [2024-04-13 01:26:04,808] [pool-1-thread-10] Initializing /data/matt/CR20070824-002_6202483715-06 003_0_P23_0Red.tif: [testng] [2024-04-13 01:26:05,210] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern8.tif: [testng] [2024-04-13 01:26:05,745] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z016.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 45 seconds Finished: SUCCESS