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Started by upstream project "BIOFORMATS-test-repo" build number 280 originally caused by: Started by upstream project "Trigger" build number 300 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3167054394431940625.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_44192_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:59:37,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:59:37,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:59:37,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:37,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:37,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:59:37,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:59:37,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:59:37,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:37,133 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:37,133 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:59:37,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:59:37,134 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:59:37,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:37,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:37,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:37,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:37,339 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:37,340 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:37,340 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:37,340 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:37,340 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:59:37,341 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:59:37,341 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-05 01:59:37,350] [main] java.version = 21 [testng] 01:59:37,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:37,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:37,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_01-59-37.log] [testng] 01:59:37,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-05 01:59:37,402] [main] testng.directory = /data [testng] [2024-12-05 01:59:37,403] [main] testng.configDirectory = /config [testng] [2024-12-05 01:59:37,412] [main] testng.multiplier = 1.0 [testng] [2024-12-05 01:59:37,412] [main] testng.in-memory = false [testng] [2024-12-05 01:59:37,412] [main] testng.allow-missing = false [testng] [2024-12-05 01:59:37,412] [main] user.language = en [testng] [2024-12-05 01:59:37,412] [main] user.country = ${user.country} [testng] [2024-12-05 01:59:37,413] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-05 02:12:10,082] [main] ---------------------------------------- [testng] [2024-12-05 02:12:10,082] [main] Total files: 7329 [testng] [2024-12-05 02:12:10,082] [main] Scan time: 752.669 s (102 ms/file) [testng] [2024-12-05 02:12:10,083] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-05 02:26:13,365] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] 02:26:13,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:26:13,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:13,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-05_02-26-13.log] [testng] 02:26:13,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@537f6c48 - End of configuration. [testng] [2024-12-05 02:26:31,896] [pool-1-thread-12] Initializing /data/graham/G_Wright deconvolved.stk: [testng] 02:26:31,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:26:31,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:31,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-05_02-26-31.log] [testng] 02:26:31,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d983b4 - End of configuration. [testng] [2024-12-05 02:26:33,526] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] 02:26:33,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:26:33,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:33,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-05_02-26-33.log] [testng] 02:26:33,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@227fa74 - End of configuration. [testng] [2024-12-05 02:26:36,335] [pool-1-thread-10] Initializing /data/aaron/metamorph.stk: [testng] 02:26:36,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:26:36,336 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:36,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-05_02-26-36.log] [testng] 02:26:36,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf027df - End of configuration. [testng] [2024-12-05 02:26:37,882] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] 02:26:37,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:26:37,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:37,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-05_02-26-37.log] [testng] 02:26:37,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c34818d - End of configuration. [testng] [2024-12-05 02:26:40,398] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] 02:26:40,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:26:40,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:40,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-05_02-26-40.log] [testng] 02:26:40,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a5968e - End of configuration. [testng] [2024-12-05 02:26:42,713] [pool-1-thread-7] Initializing /data/samples/zserEight.stk: [testng] 02:26:42,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:26:42,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:42,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-05_02-26-42.log] [testng] 02:26:42,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45af368e - End of configuration. [testng] [2024-12-05 02:26:44,225] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] 02:26:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:26:44,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-05_02-26-44.log] [testng] 02:26:44,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57bf59dd - End of configuration. [testng] [2024-12-05 02:26:44,489] [pool-1-thread-5] Initializing /data/thomas/t_test2001.tif: [testng] 02:26:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:26:44,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:44,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-05_02-26-44.log] [testng] 02:26:44,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10a8468f - End of configuration. [testng] [2024-12-05 02:26:46,121] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 02:26:46,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:26:46,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:46,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-05_02-26-46.log] [testng] 02:26:46,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1876afda - End of configuration. [testng] [2024-12-05 02:26:47,670] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] 02:26:47,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:26:47,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:47,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-05_02-26-47.log] [testng] 02:26:47,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@282baee8 - End of configuration. [testng] [2024-12-05 02:26:49,823] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-05 02:26:49,825] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] 02:26:49,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:26:49,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:49,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-05_02-26-49.log] [testng] 02:26:49,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@515e775b - End of configuration. [testng] [2024-12-05 02:27:00,292] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-05 02:27:07,222] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-12-05 02:27:11,345] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-05 02:27:14,043] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-05 02:27:14,045] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-12-05 02:27:16,617] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-12-05 02:27:19,308] [pool-1-thread-5] Used files list does not include base file [testng] [2024-12-05 02:27:19,310] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-12-05 02:27:21,785] [pool-1-thread-10] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-12-05 02:27:24,265] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-12-05 02:27:33,078] [pool-1-thread-3] Initializing /data/david/tl4.tif: [testng] [2024-12-05 02:27:36,043] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-12-05 02:27:42,172] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-12-05 02:27:46,791] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-12-05 02:27:48,936] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-12-05 02:27:50,875] [pool-1-thread-7] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-12-05 02:27:54,163] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-12-05 02:28:07,274] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-12-05 02:28:21,183] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-12-05 02:28:25,071] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-12-05 02:28:27,359] [pool-1-thread-3] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-12-05 02:28:30,548] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-12-05 02:28:32,297] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-05 02:28:36,428] [pool-1-thread-2] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-12-05 02:28:41,448] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-12-05 02:28:44,149] [pool-1-thread-6] Used files list does not include base file [testng] [2024-12-05 02:28:45,063] [pool-1-thread-10] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-12-05 02:28:49,253] [pool-1-thread-3] Initializing /data/jerome/deconv.STK: [testng] [2024-12-05 02:28:55,745] [pool-1-thread-7] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-12-05 02:28:58,625] [pool-1-thread-8] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-12-05 02:29:00,418] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-12-05 02:29:02,612] [pool-1-thread-2] Used files list does not include base file [testng] [2024-12-05 02:29:07,072] [pool-1-thread-3] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-12-05 02:29:11,683] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-05 02:29:16,079] [pool-1-thread-12] Initializing /data/qa-16915/m-01.tif: [testng] [2024-12-05 02:29:18,212] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-12-05 02:29:23,019] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-12-05 02:29:26,400] [pool-1-thread-5] Used files list does not include base file [testng] [2024-12-05 02:29:28,270] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-12-05 02:29:30,662] [pool-1-thread-3] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-12-05 02:29:33,498] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:29:35,597] [pool-1-thread-11] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-12-05 02:29:39,079] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-05 02:29:42,701] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-12-05 02:29:47,920] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-12-05 02:29:54,835] [pool-1-thread-3] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-12-05 02:29:56,577] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-12-05 02:29:58,600] [pool-1-thread-1] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-12-05 02:30:05,663] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-05 02:30:12,072] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-12-05 02:30:15,870] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-12-05 02:30:17,595] [pool-1-thread-3] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-12-05 02:30:24,694] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-12-05 02:30:28,395] [pool-1-thread-6] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-12-05 02:30:30,118] [pool-1-thread-12] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-12-05 02:31:06,863] [pool-1-thread-2] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-12-05 02:31:09,174] [pool-1-thread-5] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-12-05 02:31:17,195] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-12-05 02:31:19,173] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-05 02:31:19,202] [pool-1-thread-6] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-12-05 02:31:23,433] [pool-1-thread-7] Initializing /data/josh/2101to800.stk: [testng] [2024-12-05 02:31:30,658] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-12-05 02:31:34,116] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-12-05 02:31:36,350] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-05 02:31:40,191] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-12-05 02:31:44,375] [pool-1-thread-6] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-12-05 02:31:45,938] [pool-1-thread-9] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-12-05 02:31:48,662] [pool-1-thread-3] Initializing /data/thomas/test.tif: [testng] [2024-12-05 02:31:51,090] [pool-1-thread-8] Initializing 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/data/chris/test2_w2_s1_t1.stk: [testng] [2024-12-05 02:32:47,081] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-12-05 02:32:49,129] [pool-1-thread-8] Used files list does not include base file [testng] [2024-12-05 02:32:50,004] [pool-1-thread-6] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-12-05 02:32:58,413] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-12-05 02:33:00,089] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-12-05 02:33:04,778] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-05 02:33:08,567] [pool-1-thread-7] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-12-05 02:33:24,352] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-12-05 02:33:25,951] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-12-05 02:33:48,701] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-12-05 02:33:56,548] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:34:03,485] [pool-1-thread-4] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-12-05 02:34:04,842] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-12-05 02:34:06,419] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-05 02:34:09,895] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-12-05 02:34:18,850] [pool-1-thread-4] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-12-05 02:34:26,581] [pool-1-thread-11] Initializing /data/dave/Z Series.stk: [testng] [2024-12-05 02:34:31,918] [pool-1-thread-2] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-12-05 02:34:33,590] [pool-1-thread-4] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-12-05 02:34:50,248] [pool-1-thread-11] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-12-05 02:34:52,085] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-12-05 02:34:57,259] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-12-05 02:34:59,427] [pool-1-thread-10] Used files list does not include base file [testng] [2024-12-05 02:34:59,429] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-12-05 02:35:06,716] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-12-05 02:35:14,343] [pool-1-thread-11] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-12-05 02:35:15,911] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-12-05 02:35:20,813] [pool-1-thread-2] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-12-05 02:36:08,309] [pool-1-thread-11] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-12-05 02:36:22,061] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-12-05 02:36:28,517] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-12-05 02:36:31,162] [pool-1-thread-6] Used files list does not include base file [testng] [2024-12-05 02:36:34,770] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2024-12-05 02:36:43,969] [pool-1-thread-8] Initializing /data/samples/10xcalib.tif: [testng] [2024-12-05 02:36:52,591] [pool-1-thread-10] Initializing /data/samples/zserSixteen.stk: [testng] [2024-12-05 02:36:54,991] [pool-1-thread-8] Initializing 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02:37:35,504] [pool-1-thread-8] Initializing /data/qa-16915/m-02.tif: [testng] [2024-12-05 02:37:38,598] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-12-05 02:37:45,935] [pool-1-thread-9] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-12-05 02:37:47,024] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2024-12-05 02:37:48,404] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-12-05 02:37:53,076] [pool-1-thread-6] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-12-05 02:37:54,728] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-12-05 02:37:58,077] [pool-1-thread-10] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-12-05 02:38:03,133] [pool-1-thread-6] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-12-05 02:38:08,230] [pool-1-thread-9] Initializing 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[testng] [2024-12-05 02:38:47,052] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-12-05 02:38:54,598] [pool-1-thread-6] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-12-05 02:39:02,046] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2024-12-05 02:39:06,497] [pool-1-thread-6] Initializing /data/samples/diatoms3d.stk: [testng] [2024-12-05 02:39:12,015] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-12-05 02:39:14,460] [pool-1-thread-6] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-12-05 02:39:20,353] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-05 02:39:22,455] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:39:25,925] [pool-1-thread-10] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-12-05 02:39:30,818] [pool-1-thread-6] Initializing /data/samples/10xcalib.stk: [testng] [2024-12-05 02:39:36,394] [pool-1-thread-10] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-12-05 02:39:40,765] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-05 02:39:45,656] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-12-05 02:39:47,707] [pool-1-thread-8] Initializing /data/qa-16887/m-01.tif: [testng] [2024-12-05 02:39:51,223] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:39:52,332] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-12-05 02:39:53,452] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-05 02:40:00,583] [pool-1-thread-8] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-12-05 02:40:09,211] [pool-1-thread-6] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-12-05 02:40:16,975] [pool-1-thread-8] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2024-12-05 02:40:35,115] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-12-05 02:40:37,098] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-12-05 02:40:39,185] [pool-1-thread-4] Initializing /data/qa-16915/m-04.tif: [testng] [2024-12-05 02:40:50,933] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-12-05 02:40:53,255] [pool-1-thread-3] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-12-05 02:40:56,011] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-12-05 02:41:01,592] [pool-1-thread-2] Initializing /data/alex/Selected FITC.stk: [testng] [2024-12-05 02:41:07,420] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-12-05 02:41:15,129] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-12-05 02:41:19,216] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-12-05 02:41:23,508] [pool-1-thread-2] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-12-05 02:41:32,928] [pool-1-thread-9] Initializing /data/steve/Experiment2.tif: [testng] [2024-12-05 02:41:35,633] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-12-05 02:41:47,552] [pool-1-thread-9] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-12-05 02:41:52,736] [pool-1-thread-4] Initializing /data/ascb/mt aim.tif: [testng] [2024-12-05 02:42:02,990] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-12-05 02:42:04,435] [pool-1-thread-4] Used files list does not include base file [testng] [2024-12-05 02:42:14,518] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-12-05 02:42:26,157] [pool-1-thread-2] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-12-05 02:42:34,537] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-12-05 02:42:40,413] [pool-1-thread-4] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-12-05 02:43:00,328] [pool-1-thread-2] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-12-05 02:43:19,192] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-12-05 02:43:28,855] [pool-1-thread-2] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-12-05 02:43:37,338] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:43:38,869] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-12-05 02:43:40,755] [pool-1-thread-9] Used files list does not include base file [testng] [2024-12-05 02:43:53,741] [pool-1-thread-2] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-12-05 02:43:56,013] [pool-1-thread-4] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-12-05 02:44:04,345] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-12-05 02:44:07,980] [pool-1-thread-4] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-12-05 02:44:13,414] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-12-05 02:44:33,214] [pool-1-thread-4] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-12-05 02:44:35,342] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-12-05 02:44:41,919] [pool-1-thread-4] Initializing /data/cumol-test-series/23.001: [testng] [2024-12-05 02:44:43,814] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-12-05 02:44:57,093] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-12-05 02:44:59,082] [pool-1-thread-3] Used files list does not include base file [testng] [2024-12-05 02:45:06,212] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-12-05 02:45:30,218] [pool-1-thread-9] Initializing /data/samples/zser24.stk: [testng] [2024-12-05 02:45:39,884] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-12-05 02:45:55,323] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-12-05 02:46:17,072] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-12-05 02:46:28,092] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-12-05 02:46:33,118] [pool-1-thread-11] Initializing /data/grant/X.STK: [testng] [2024-12-05 02:46:48,431] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-12-05 02:46:50,841] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-12-05 02:46:52,829] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-12-05 02:46:54,965] [pool-1-thread-9] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-12-05 02:47:02,143] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-12-05 02:47:24,267] [pool-1-thread-2] Initializing /data/josh/2101to600astk.stk: [testng] [2024-12-05 02:48:05,279] [pool-1-thread-3] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-12-05 02:48:08,914] [pool-1-thread-10] Initializing /data/josh/2101to600e.stk: [testng] [2024-12-05 02:48:20,542] [pool-1-thread-11] Initializing /data/qa-30870/220209_posit5.tif: [testng] 05:30:17,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:30:17,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:30:17,041 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-05_05-30-17.log] [testng] 05:30:17,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ce781c4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 210 minutes 43 seconds Finished: SUCCESS