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Started by upstream project "BIOFORMATS-test-repo" build number 287 originally caused by: Started by upstream project "Trigger" build number 306 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9642252580208999699.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_45268_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:21:16,006 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:16,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:21:16,007 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:16,008 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:16,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:16,008 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:16,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:16,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:16,009 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:16,009 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:16,010 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:16,010 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:16,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:16,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:16,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:16,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:16,193 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:16,194 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:16,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:16,194 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:16,194 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:21:16,195 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:21:16,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-11 00:21:16,203] [main] java.version = 17.0.2 [testng] 00:21:16,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:16,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:16,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-11_00-21-16.log] [testng] 00:21:16,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-11 00:21:16,249] [main] testng.directory = /data [testng] [2024-12-11 00:21:16,249] [main] testng.configDirectory = /config [testng] [2024-12-11 00:21:16,258] [main] testng.multiplier = 1.0 [testng] [2024-12-11 00:21:16,259] [main] testng.in-memory = false [testng] [2024-12-11 00:21:16,259] [main] testng.allow-missing = false [testng] [2024-12-11 00:21:16,259] [main] user.language = en [testng] [2024-12-11 00:21:16,259] [main] user.country = ${user.country} [testng] [2024-12-11 00:21:16,259] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-11 00:21:38,123] [main] ---------------------------------------- [testng] [2024-12-11 00:21:38,123] [main] Total files: 316 [testng] [2024-12-11 00:21:38,123] [main] Scan time: 21.864 s (69 ms/file) [testng] [2024-12-11 00:21:38,123] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 193 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-11 00:37:06,789] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] 00:37:06,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:37:06,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:06,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-11_00-37-06.log] [testng] 00:37:06,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35e674c2 - End of configuration. [testng] [2024-12-11 00:37:07,939] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] 00:37:07,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:37:07,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:07,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-11_00-37-07.log] [testng] 00:37:07,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aa61652 - End of configuration. [testng] [2024-12-11 00:37:08,439] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] 00:37:08,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:37:08,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:08,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-11_00-37-08.log] [testng] 00:37:08,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eff7860 - End of configuration. [testng] [2024-12-11 00:37:09,278] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] 00:37:09,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:37:09,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:09,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-11_00-37-09.log] [testng] 00:37:09,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a8eaf34 - End of configuration. [testng] [2024-12-11 00:37:09,760] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] 00:37:09,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:37:09,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:09,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-11_00-37-09.log] [testng] 00:37:09,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17aee2b1 - End of configuration. [testng] [2024-12-11 00:37:10,389] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] 00:37:10,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:37:10,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:10,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-11_00-37-10.log] [testng] 00:37:10,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7d93c8 - End of configuration. [testng] [2024-12-11 00:37:10,952] [pool-1-thread-7] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] 00:37:10,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:37:10,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:10,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-11_00-37-10.log] [testng] 00:37:10,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5340edd3 - End of configuration. [testng] [2024-12-11 00:37:13,095] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] 00:37:13,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:37:13,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:13,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-11_00-37-13.log] [testng] 00:37:13,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ed48ef - End of configuration. [testng] [2024-12-11 00:37:13,824] [pool-1-thread-5] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] 00:37:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:37:13,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:13,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-11_00-37-13.log] [testng] 00:37:13,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37af0d6a - End of configuration. [testng] [2024-12-11 00:37:14,554] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] 00:37:14,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:37:14,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:14,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-11_00-37-14.log] [testng] 00:37:14,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@665176a - End of configuration. [testng] [2024-12-11 00:37:15,321] [pool-1-thread-3] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] 00:37:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:37:15,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:15,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-11_00-37-15.log] [testng] 00:37:15,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1344a6a4 - End of configuration. [testng] [2024-12-11 00:37:15,937] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] 00:37:15,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:37:15,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:15,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-11_00-37-15.log] [testng] 00:37:15,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a2435f - End of configuration. [testng] [2024-12-11 00:37:26,099] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-12-11 00:37:29,915] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-12-11 00:37:31,124] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-12-11 00:37:32,440] [pool-1-thread-8] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-12-11 00:37:33,310] [pool-1-thread-12] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-12-11 00:37:35,037] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-12-11 00:37:35,491] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] [2024-12-11 00:37:36,223] [pool-1-thread-7] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-12-11 00:37:37,114] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-12-11 00:37:38,363] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-12-11 00:37:39,114] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-12-11 00:37:40,669] [pool-1-thread-10] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-12-11 00:37:50,288] [pool-1-thread-3] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-12-11 00:37:51,326] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-12-11 00:37:52,063] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-12-11 00:37:54,869] [pool-1-thread-5] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-12-11 00:37:55,744] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-12-11 00:37:59,301] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-12-11 00:38:00,412] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-12-11 00:38:02,417] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-12-11 00:38:03,861] [pool-1-thread-12] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-12-11 00:38:04,714] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-12-11 00:38:05,453] [pool-1-thread-7] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-12-11 00:39:04,960] [pool-1-thread-8] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-12-11 00:39:05,755] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-12-11 00:39:08,244] [pool-1-thread-12] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-12-11 00:39:10,100] [pool-1-thread-6] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-12-11 00:39:12,973] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-12-11 00:39:13,997] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-12-11 00:39:15,326] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-12-11 00:39:16,050] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-12-11 00:39:17,073] [pool-1-thread-9] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-12-11 00:39:17,813] [pool-1-thread-4] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-12-11 00:39:22,309] [pool-1-thread-3] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-12-11 00:39:24,067] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-12-11 00:39:26,465] [pool-1-thread-2] Initializing /data/qa-17919/f10187.oir: [testng] [2024-12-11 00:39:46,153] [pool-1-thread-6] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-12-11 00:39:47,940] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-12-11 00:39:48,993] [pool-1-thread-9] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-12-11 00:39:49,998] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-12-11 00:39:51,643] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-12-11 00:39:52,366] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-12-11 00:39:53,966] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-12-11 00:40:04,430] [pool-1-thread-3] Initializing /data/olympus/XYZt.vsi: [testng] [2024-12-11 00:40:05,368] [pool-1-thread-8] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-12-11 00:40:07,668] [pool-1-thread-1] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-12-11 00:40:08,694] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-12-11 00:40:11,948] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-12-11 00:40:15,330] [pool-1-thread-5] Initializing /data/imagesc-105684/1202-interval_30sec_sequence_frame.oir: [testng] [2024-12-11 00:40:16,432] [pool-1-thread-10] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-12-11 00:40:22,442] [pool-1-thread-3] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-12-11 00:40:28,554] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-12-11 00:40:30,450] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-12-11 00:40:31,896] [pool-1-thread-12] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-12-11 00:40:33,022] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-12-11 00:40:38,825] [pool-1-thread-3] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-12-11 00:40:45,164] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-12-11 00:40:46,448] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-12-11 00:40:48,690] [pool-1-thread-9] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-12-11 00:40:49,946] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-12-11 00:40:55,303] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-12-11 00:40:59,124] [pool-1-thread-12] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-12-11 00:41:01,353] [pool-1-thread-5] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-12-11 00:41:06,114] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-12-11 00:41:07,226] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-11 00:41:14,192] [pool-1-thread-1] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-12-11 00:41:17,942] [pool-1-thread-12] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-12-11 00:41:21,535] [pool-1-thread-4] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-12-11 00:41:27,307] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-12-11 00:41:28,116] [pool-1-thread-12] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-12-11 00:41:29,412] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-12-11 00:41:39,198] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-12-11 00:41:40,082] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-12-11 00:41:43,433] [pool-1-thread-3] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-12-11 00:41:51,890] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-12-11 00:41:53,213] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-12-11 00:41:53,957] [pool-1-thread-1] Initializing /data/qa-17270/stack1.oir: [testng] [2024-12-11 00:41:56,329] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-12-11 00:42:00,320] [pool-1-thread-4] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-12-11 00:42:01,320] [pool-1-thread-12] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-12-11 00:42:05,540] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-12-11 00:42:06,417] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-12-11 00:42:07,221] [pool-1-thread-8] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-12-11 00:42:09,011] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-12-11 00:42:12,943] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-12-11 00:42:13,681] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-12-11 00:42:17,567] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-12-11 00:42:21,183] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-12-11 00:42:22,043] [pool-1-thread-6] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-12-11 00:42:23,773] [pool-1-thread-9] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-12-11 00:42:24,963] [pool-1-thread-1] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-12-11 00:42:25,797] [pool-1-thread-4] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-12-11 00:42:26,551] [pool-1-thread-12] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-12-11 00:42:31,498] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-12-11 00:42:32,707] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-12-11 00:42:33,836] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-12-11 00:42:34,935] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-12-11 00:42:35,411] [pool-1-thread-4] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-12-11 00:42:39,112] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-12-11 00:42:40,712] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-12-11 00:42:45,890] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-12-11 00:42:46,406] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-12-11 00:42:47,344] [pool-1-thread-4] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-12-11 00:42:47,998] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-12-11 00:42:52,794] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-12-11 00:42:56,577] [pool-1-thread-9] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-12-11 00:42:57,456] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-12-11 00:42:58,249] [pool-1-thread-4] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-12-11 00:42:59,122] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-12-11 00:42:59,723] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-12-11 00:43:04,285] [pool-1-thread-9] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-12-11 00:43:10,127] [pool-1-thread-1] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-12-11 00:43:10,895] [pool-1-thread-12] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-12-11 00:43:12,071] [pool-1-thread-4] DeltaT: FAILED (series 0, plane 3 (expected 2.34606, actual 0.025)) [testng] [2024-12-11 00:43:15,225] [pool-1-thread-2] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-12-11 00:43:15,886] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-12-11 00:43:19,392] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-12-11 00:43:21,476] [pool-1-thread-12] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-12-11 00:43:24,924] [pool-1-thread-9] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-12-11 00:43:27,741] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-12-11 00:43:29,179] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-12-11 00:43:30,622] [pool-1-thread-12] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-12-11 00:43:35,512] [pool-1-thread-8] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-12-11 00:43:37,584] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-12-11 00:43:38,649] [pool-1-thread-9] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-12-11 00:43:40,405] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-12-11 00:43:46,068] [pool-1-thread-11] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-12-11 00:43:48,650] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-12-11 00:43:49,583] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-12-11 00:43:53,276] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-12-11 00:43:57,930] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-12-11 00:43:59,589] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-12-11 00:44:01,737] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-12-11 00:44:03,211] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-12-11 00:44:06,779] [pool-1-thread-6] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-12-11 00:44:09,058] [pool-1-thread-8] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-12-11 00:44:33,183] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-12-11 00:44:33,751] [pool-1-thread-4] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-12-11 00:44:36,571] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-12-11 00:44:37,326] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-12-11 00:44:38,587] [pool-1-thread-9] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-12-11 00:44:39,558] [pool-1-thread-11] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-12-11 00:44:41,428] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: [testng] [2024-12-11 00:44:45,684] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-12-11 00:44:49,328] [pool-1-thread-4] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] [2024-12-11 00:44:51,679] [pool-1-thread-11] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-11 00:44:53,711] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-12-11 00:44:55,152] [pool-1-thread-9] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-12-11 00:44:59,138] [pool-1-thread-11] DeltaT: FAILED (series 0, plane 5 (expected 40.715, actual 0.0)) [testng] [2024-12-11 00:45:01,113] [pool-1-thread-9] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-12-11 00:45:02,546] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir: [testng] [2024-12-11 00:45:36,406] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-12-11 00:45:38,984] [pool-1-thread-9] Initializing /data/olympus/XYZt.oir: [testng] [2024-12-11 00:45:43,585] [pool-1-thread-11] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-12-11 00:45:44,262] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-12-11 00:45:47,090] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-12-11 00:45:53,844] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-12-11 00:45:59,609] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-12-11 00:46:01,610] [pool-1-thread-4] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-12-11 00:46:04,298] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-12-11 00:46:08,208] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-12-11 00:46:09,453] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-12-11 00:46:15,727] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-12-11 00:46:21,816] [pool-1-thread-3] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-12-11 00:46:22,484] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-12-11 00:46:29,116] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-12-11 00:46:36,220] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-12-11 00:46:37,391] [pool-1-thread-2] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-12-11 00:46:38,967] [pool-1-thread-9] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-12-11 00:46:45,115] [pool-1-thread-1] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-12-11 00:46:46,706] [pool-1-thread-9] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-12-11 00:46:55,530] [pool-1-thread-3] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-12-11 00:46:58,117] [pool-1-thread-1] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-12-11 00:47:07,629] [pool-1-thread-3] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-12-11 00:47:12,295] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-12-11 00:47:14,920] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-12-11 00:47:19,621] [pool-1-thread-2] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-11 00:47:23,666] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-12-11 00:47:27,306] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-12-11 00:47:34,195] [pool-1-thread-2] DeltaT: FAILED (series 0, plane 5 (expected 10.054, actual 0.02)) [testng] [2024-12-11 00:47:34,637] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-12-11 00:47:38,545] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-12-11 00:47:40,379] [pool-1-thread-9] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-12-11 00:47:42,133] [pool-1-thread-9] DeltaT: FAILED (series 0, plane 2 (expected 0.126953125, actual 0.0)) [testng] [2024-12-11 00:47:45,483] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 10229, Failures: 4, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 53 minutes 40 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE