![[Jenkins]](/jenkins/static/f5fa13f0/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 295 originally caused by: Started by upstream project "Trigger" build number 314 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12319500794966733186.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46583_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:43,448 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:43,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:43,449 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:43,450 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:43,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:43,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:43,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:43,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:43,452 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:43,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:43,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:43,453 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:43,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:43,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:43,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:43,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:43,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:43,663 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:43,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:43,663 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:43,663 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:43,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:43,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 212 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-19 00:22:43,674] [main] java.version = 21 [testng] 00:22:43,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:43,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:43,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_00-22-43.log] [testng] 00:22:43,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-19 00:22:43,726] [main] testng.directory = /data [testng] [2024-12-19 00:22:43,726] [main] testng.configDirectory = /config [testng] [2024-12-19 00:22:43,740] [main] testng.multiplier = 1.0 [testng] [2024-12-19 00:22:43,741] [main] testng.in-memory = false [testng] [2024-12-19 00:22:43,741] [main] testng.allow-missing = false [testng] [2024-12-19 00:22:43,741] [main] user.language = en [testng] [2024-12-19 00:22:43,741] [main] user.country = ${user.country} [testng] [2024-12-19 00:22:43,741] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-19 00:23:04,855] [main] ---------------------------------------- [testng] [2024-12-19 00:23:04,855] [main] Total files: 320 [testng] [2024-12-19 00:23:04,855] [main] Scan time: 21.114 s (65 ms/file) [testng] [2024-12-19 00:23:04,855] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 196 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-19 00:37:01,056] [pool-1-thread-1] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] 00:37:01,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:37:01,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:01,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-19_00-37-01.log] [testng] 00:37:01,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f03ae2f - End of configuration. [testng] [2024-12-19 00:37:02,089] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] 00:37:02,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:37:02,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:02,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_00-37-02.log] [testng] 00:37:02,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4865db19 - End of configuration. [testng] [2024-12-19 00:37:02,552] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] 00:37:02,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:37:02,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:02,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-19_00-37-02.log] [testng] 00:37:02,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3c9b67 - End of configuration. [testng] [2024-12-19 00:37:03,223] [pool-1-thread-10] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] 00:37:03,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:37:03,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:03,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_00-37-03.log] [testng] 00:37:03,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a903c79 - End of configuration. [testng] [2024-12-19 00:37:04,267] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] 00:37:04,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:37:04,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:04,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-19_00-37-04.log] [testng] 00:37:04,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593b70b9 - End of configuration. [testng] [2024-12-19 00:37:07,565] [pool-1-thread-8] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] 00:37:07,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:37:07,565 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:07,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-19_00-37-07.log] [testng] 00:37:07,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44e3d994 - End of configuration. [testng] [2024-12-19 00:37:08,241] [pool-1-thread-7] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] 00:37:08,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:37:08,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:08,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-19_00-37-08.log] [testng] 00:37:08,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6444fef - End of configuration. [testng] [2024-12-19 00:37:08,817] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] 00:37:08,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:37:08,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:08,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-19_00-37-08.log] [testng] 00:37:08,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276622da - End of configuration. [testng] [2024-12-19 00:37:09,468] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] 00:37:09,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:37:09,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:09,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-19_00-37-09.log] [testng] 00:37:09,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b1ad59 - End of configuration. [testng] [2024-12-19 00:37:10,455] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] 00:37:10,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:37:10,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:10,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-19_00-37-10.log] [testng] 00:37:10,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b586253 - End of configuration. [testng] [2024-12-19 00:37:11,133] [pool-1-thread-3] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 00:37:11,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:37:11,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:11,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_00-37-11.log] [testng] 00:37:11,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31f49706 - End of configuration. [testng] [2024-12-19 00:37:11,907] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 00:37:11,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:37:11,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:11,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_00-37-11.log] [testng] 00:37:11,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44308be5 - End of configuration. [testng] [2024-12-19 00:37:19,699] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-12-19 00:37:20,505] [pool-1-thread-2] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-12-19 00:37:21,158] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-12-19 00:37:21,621] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-12-19 00:37:22,488] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-12-19 00:37:23,056] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-12-19 00:37:24,298] [pool-1-thread-12] Initializing /data/olympus/XYZt.vsi: [testng] [2024-12-19 00:37:25,094] [pool-1-thread-7] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-12-19 00:37:26,719] [pool-1-thread-1] Initializing /data/olympus/Clipboard-XYZt.tif: [testng] [2024-12-19 00:37:28,544] [pool-1-thread-5] Initializing /data/qa-17335/stimulation_0001_LSM.oir: [testng] [2024-12-19 00:37:32,142] [pool-1-thread-6] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-12-19 00:37:33,525] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-12-19 00:37:34,684] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] [2024-12-19 00:37:37,088] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif: [testng] [2024-12-19 00:37:37,895] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-12-19 00:37:39,448] [pool-1-thread-2] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-12-19 00:38:01,825] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir: [testng] [2024-12-19 00:38:02,838] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-12-19 00:38:03,932] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-12-19 00:38:04,665] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] [2024-12-19 00:38:06,071] [pool-1-thread-12] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-12-19 00:38:10,053] [pool-1-thread-4] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-12-19 00:38:14,501] [pool-1-thread-10] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-12-19 00:38:16,382] [pool-1-thread-6] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4T_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-19 00:38:17,188] [pool-1-thread-11] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-12-19 00:38:18,731] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-12-19 00:38:21,076] [pool-1-thread-5] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-19 00:38:25,892] [pool-1-thread-12] Initializing /data/qa-17270/alexa488.ome.tif: [testng] [2024-12-19 00:38:30,030] [pool-1-thread-10] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-12-19 00:38:34,705] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-12-19 00:38:35,756] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-12-19 00:38:38,273] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-12-19 00:38:40,895] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif: [testng] [2024-12-19 00:38:46,798] [pool-1-thread-11] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-12-19 00:38:47,563] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-12-19 00:38:52,787] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-12-19 00:38:54,193] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-12-19 00:38:55,787] [pool-1-thread-6] Initializing /data/qa-17270/image1.oir: [testng] [2024-12-19 00:38:59,836] [pool-1-thread-5] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-12-19 00:39:00,910] [pool-1-thread-10] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-12-19 00:39:03,501] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-12-19 00:39:05,529] [pool-1-thread-12] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-12-19 00:39:07,364] [pool-1-thread-8] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame_z stack.oir: [testng] [2024-12-19 00:39:09,357] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] [2024-12-19 00:39:11,938] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-12-19 00:39:13,330] [pool-1-thread-5] Initializing /data/qa-17335/1.oir: [testng] [2024-12-19 00:39:15,013] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-12-19 00:39:17,571] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-12-19 00:39:19,387] [pool-1-thread-12] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif: [testng] [2024-12-19 00:39:21,703] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] [2024-12-19 00:39:23,011] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-12-19 00:39:25,239] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-12-19 00:39:28,692] [pool-1-thread-3] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-12-19 00:39:30,448] [pool-1-thread-11] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-12-19 00:39:31,401] [pool-1-thread-8] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-12-19 00:39:32,611] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-12-19 00:39:33,290] [pool-1-thread-12] Initializing /data/olympus/XYZt.oir: [testng] [2024-12-19 00:39:37,373] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-12-19 00:39:38,344] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] [2024-12-19 00:39:39,707] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-12-19 00:39:43,536] [pool-1-thread-5] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-12-19 00:39:47,592] [pool-1-thread-11] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-12-19 00:39:49,202] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif: [testng] [2024-12-19 00:39:53,274] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-12-19 00:39:55,694] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-12-19 00:39:56,941] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-12-19 00:39:59,839] [pool-1-thread-8] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] [2024-12-19 00:40:01,296] [pool-1-thread-12] Initializing /data/public/imagesc-105684/1202-interval_10sec_sequence_frame.oir: [testng] [2024-12-19 00:40:02,249] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-12-19 00:40:07,045] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-12-19 00:40:09,692] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-12-19 00:40:16,267] [pool-1-thread-3] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-12-19 00:40:18,266] [pool-1-thread-7] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-12-19 00:40:20,247] [pool-1-thread-11] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-12-19 00:40:22,946] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-12-19 00:40:27,224] [pool-1-thread-7] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-12-19 00:40:28,281] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-12-19 00:40:30,131] [pool-1-thread-11] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir: [testng] [2024-12-19 00:40:31,255] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif: [testng] [2024-12-19 00:40:40,047] [pool-1-thread-7] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-12-19 00:40:41,727] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-12-19 00:40:42,950] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-12-19 00:40:43,669] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-12-19 00:40:48,240] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-12-19 00:40:49,041] [pool-1-thread-11] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-12-19 00:40:49,827] [pool-1-thread-10] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-12-19 00:40:55,259] [pool-1-thread-12] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-12-19 00:40:56,957] [pool-1-thread-10] Initializing /data/qa-17335/Clipboard-1.tif: [testng] [2024-12-19 00:40:58,322] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-12-19 00:40:59,175] [pool-1-thread-1] Initializing /data/public/imagesc-105684/1202-interval_30sec_sequence_frame.oir: [testng] [2024-12-19 00:40:59,857] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-12-19 00:41:01,131] [pool-1-thread-6] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-12-19 00:41:02,125] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-12-19 00:41:07,890] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-12-19 00:41:09,191] [pool-1-thread-12] Initializing /data/public/imagesc-105684/1202-interval_freeRun_sequence_frame.oir: [testng] [2024-12-19 00:41:11,446] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-12-19 00:41:14,003] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-12-19 00:41:15,075] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif: [testng] [2024-12-19 00:41:15,859] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-12-19 00:41:22,979] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-12-19 00:41:24,163] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-12-19 00:41:24,659] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-12-19 00:41:25,410] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif: [testng] [2024-12-19 00:41:26,220] [pool-1-thread-3] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-12-19 00:41:26,863] [pool-1-thread-8] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-12-19 00:41:30,312] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-12-19 00:41:33,426] [pool-1-thread-12] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-12-19 00:41:36,025] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-12-19 00:41:37,996] [pool-1-thread-10] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-12-19 00:41:38,870] [pool-1-thread-1] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-12-19 00:41:39,514] [pool-1-thread-11] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-12-19 00:41:41,406] [pool-1-thread-3] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-12-19 00:41:43,108] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir: [testng] [2024-12-19 00:41:50,688] [pool-1-thread-12] Initializing /data/qa-17270/stack1.oir: [testng] [2024-12-19 00:41:52,627] [pool-1-thread-6] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-12-19 00:42:46,737] [pool-1-thread-2] Initializing /data/olympus/calcium sparks.jpg: [testng] [2024-12-19 00:42:46,956] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-12-19 00:42:48,171] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-12-19 00:42:50,119] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI_mCherry_22Lambda-420-630-w10nm-s10nm.oir: [testng] [2024-12-19 00:42:51,534] [pool-1-thread-8] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-12-19 00:42:52,873] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-12-19 00:42:53,665] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-stack1.tif: [testng] [2024-12-19 00:42:57,879] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] [2024-12-19 00:43:05,426] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-12-19 00:43:06,806] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-12-19 00:43:09,370] [pool-1-thread-3] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-12-19 00:43:10,829] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-12-19 00:43:11,648] [pool-1-thread-11] Initializing /data/qa-17919/f10187.oir: [testng] [2024-12-19 00:43:35,860] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-12-19 00:43:38,565] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-12-19 00:43:39,327] [pool-1-thread-8] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-12-19 00:43:39,887] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-12-19 00:43:40,825] [pool-1-thread-3] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-12-19 00:43:45,828] [pool-1-thread-1] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-12-19 00:43:47,367] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-12-19 00:43:50,064] [pool-1-thread-8] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-12-19 00:43:51,255] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-12-19 00:43:52,604] [pool-1-thread-10] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-12-19 00:43:57,282] [pool-1-thread-1] Initializing /data/public/gh-4205/zenodo-13680725/Stitch_A01_G001.oir: [testng] [2024-12-19 00:43:59,711] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-12-19 00:44:01,827] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-12-19 00:44:03,627] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-12-19 00:44:09,452] [pool-1-thread-7] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] [2024-12-19 00:44:10,839] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-12-19 00:44:12,343] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-12-19 00:44:14,114] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-12-19 00:44:19,419] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-12-19 00:44:22,480] [pool-1-thread-3] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-12-19 00:44:23,046] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-12-19 00:44:24,671] [pool-1-thread-8] Initializing /data/public/gh-4205/zenodo-13680725/matl.omp2info: [testng] [2024-12-19 00:44:33,334] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-12-19 00:44:36,423] [pool-1-thread-7] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-12-19 00:44:37,534] [pool-1-thread-10] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-12-19 00:44:39,164] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-12-19 00:44:40,379] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir: [testng] [2024-12-19 00:44:44,114] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] [2024-12-19 00:44:46,261] [pool-1-thread-10] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-12-19 00:44:46,975] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-12-19 00:44:47,640] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-12-19 00:44:55,715] [pool-1-thread-7] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-12-19 00:44:59,992] [pool-1-thread-12] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-12-19 00:45:04,260] [pool-1-thread-10] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-12-19 00:45:09,289] [pool-1-thread-12] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-12-19 00:45:10,239] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-12-19 00:45:18,677] [pool-1-thread-10] Initializing /data/public/gh-4205/zenodo-12773657/DAPI-mCherry_3T_4Z_5Lambda-420-630-w10nm-s50nm.oir: [testng] [2024-12-19 00:45:28,724] [pool-1-thread-12] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-12-19 00:45:33,192] [pool-1-thread-3] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-12-19 00:45:35,328] [pool-1-thread-12] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-12-19 00:45:38,843] [pool-1-thread-1] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-12-19 00:45:39,900] [pool-1-thread-3] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-12-19 00:45:44,790] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-12-19 00:45:46,442] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-12-19 00:45:51,467] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-12-19 00:45:56,580] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] [2024-12-19 00:46:26,313] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-12-19 00:46:29,552] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-12-19 00:46:32,018] [pool-1-thread-7] Initializing /data/qa-16871/XY_0003.ome.tif: [testng] [2024-12-19 00:46:34,966] [pool-1-thread-5] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-12-19 00:46:37,656] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-12-19 00:46:39,002] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-12-19 00:46:39,942] [pool-1-thread-7] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-12-19 00:46:40,585] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir: [testng] [2024-12-19 00:46:43,906] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-12-19 00:46:44,819] [pool-1-thread-10] Initializing /data/qa-17331/Clipboard.tif: time="2024-12-19T01:00:55Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE