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Started by upstream project "BIOFORMATS-test-repo" build number 295 originally caused by: Started by upstream project "Trigger" build number 314 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1516896290568949715.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_46584_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:44,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:22:44,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:22:44,203 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:44,204 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:22:44,204 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:22:44,205 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:22:44,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:22:44,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:44,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:22:44,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:22:44,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:22:44,206 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:22:44,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:44,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:44,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:44,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:44,390 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:44,390 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:44,390 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:44,390 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:44,390 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:22:44,391 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:22:44,391 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-19 00:22:44,400] [main] java.version = 21 [testng] 00:22:44,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:44,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:44,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-19_00-22-44.log] [testng] 00:22:44,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-12-19 00:22:44,449] [main] testng.directory = /data [testng] [2024-12-19 00:22:44,449] [main] testng.configDirectory = /config [testng] [2024-12-19 00:22:44,458] [main] testng.multiplier = 1.0 [testng] [2024-12-19 00:22:44,458] [main] testng.in-memory = false [testng] [2024-12-19 00:22:44,459] [main] testng.allow-missing = false [testng] [2024-12-19 00:22:44,459] [main] user.language = en [testng] [2024-12-19 00:22:44,459] [main] user.country = ${user.country} [testng] [2024-12-19 00:22:44,459] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-19 00:23:18,693] [main] ---------------------------------------- [testng] [2024-12-19 00:23:18,694] [main] Total files: 4426 [testng] [2024-12-19 00:23:18,694] [main] Scan time: 34.234 s (7 ms/file) [testng] [2024-12-19 00:23:18,695] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-19 00:44:44,425] [pool-1-thread-1] Initializing /data/lzw/Cortico-Striatal.tif: [testng] 00:44:44,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:44:44,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:44,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-19_00-44-44.log] [testng] 00:44:44,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3edad85f - End of configuration. [testng] [2024-12-19 00:44:45,358] [pool-1-thread-12] Initializing /data/brian/Ch1_fld1.tif: [testng] 00:44:45,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:44:45,358 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:45,359 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-12-19_00-44-45.log] [testng] 00:44:45,360 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf60f51 - End of configuration. [testng] [2024-12-19 00:44:46,527] [pool-1-thread-11] Initializing /data/qa-4054/NM80 Plato R) calb pul.tif: [testng] 00:44:46,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:44:46,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:46,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-12-19_00-44-46.log] [testng] 00:44:46,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f333700 - End of configuration. [testng] [2024-12-19 00:44:47,500] [pool-1-thread-10] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] 00:44:47,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:44:47,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:47,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-12-19_00-44-47.log] [testng] 00:44:47,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60834fd1 - End of configuration. [testng] [2024-12-19 00:44:49,490] [pool-1-thread-9] Initializing /data/ascb/CYT-146_Fader_Distribution.tif: [testng] 00:44:49,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:44:49,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:49,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-12-19_00-44-49.log] [testng] 00:44:49,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ec5b786 - End of configuration. [testng] [2024-12-19 00:44:50,296] [pool-1-thread-8] Initializing /data/josiah/cell-Z22.C1.tiff: [testng] 00:44:50,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:44:50,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:50,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-12-19_00-44-50.log] [testng] 00:44:50,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@585593c0 - End of configuration. [testng] [2024-12-19 00:44:50,944] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z017.tif: [testng] 00:44:50,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:44:50,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:50,945 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-12-19_00-44-50.log] [testng] 00:44:50,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@300835e - End of configuration. [testng] [2024-12-19 00:44:51,561] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z046.tif: [testng] 00:44:51,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:44:51,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:51,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-12-19_00-44-51.log] [testng] 00:44:51,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3028f7b0 - End of configuration. [testng] [2024-12-19 00:44:52,363] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z026.tif: [testng] 00:44:52,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:44:52,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:52,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-19_00-44-52.log] [testng] 00:44:52,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60277a36 - End of configuration. [testng] [2024-12-19 00:44:53,045] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z021.tif: [testng] 00:44:53,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:44:53,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:53,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-19_00-44-53.log] [testng] 00:44:53,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@248b2d60 - End of configuration. [testng] [2024-12-19 00:44:53,988] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-05.tiff: [testng] 00:44:53,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:44:53,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:53,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-19_00-44-53.log] [testng] 00:44:53,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@379335d9 - End of configuration. [testng] [2024-12-19 00:44:54,961] [pool-1-thread-2] Initializing /data/curtis/test1.tiff: [testng] 00:44:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:44:54,961 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:54,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-19_00-44-54.log] [testng] 00:44:54,962 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2caa05b9 - End of configuration. [testng] [2024-12-19 00:45:07,900] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z045.tif: [testng] [2024-12-19 00:45:09,237] [pool-1-thread-3] Initializing /data/josiah/cell-Z11.C1.tiff: [testng] [2024-12-19 00:45:10,150] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z003.tif: [testng] [2024-12-19 00:45:11,000] [pool-1-thread-4] Initializing /data/samples/cielab/Ski_TC8-03_ROMM.tif: [testng] [2024-12-19 00:45:11,988] [pool-1-thread-1] Initializing /data/josiah/cell-Z2.C1.tiff: [testng] [2024-12-19 00:45:12,845] [pool-1-thread-8] Initializing /data/sub-resolution/Leica-2/Leica-2-subifds.tiff: [testng] [2024-12-19 00:45:14,233] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C0_Z002.tif: [testng] [2024-12-19 00:45:16,071] [pool-1-thread-7] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-12-19 00:45:17,268] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2024-12-19 00:45:19,176] [pool-1-thread-10] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2024-12-19 00:45:28,408] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-12-19 00:45:30,030] [pool-1-thread-7] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-12-19 00:45:32,375] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x64.tiff: [testng] [2024-12-19 00:45:33,374] [pool-1-thread-6] Initializing /data/ascb/FND-26a_PaladeGlycogenLabeled_4800.tif: [testng] [2024-12-19 00:45:36,422] [pool-1-thread-10] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs001.TIF: [testng] [2024-12-19 00:45:37,728] [pool-1-thread-2] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-12-19 00:45:38,807] [pool-1-thread-3] Initializing /data/damian/18m.tiff: [testng] [2024-12-19 00:45:39,851] [pool-1-thread-11] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2024-12-19 00:45:40,854] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z006.tif: [testng] [2024-12-19 00:45:45,107] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z002.tif: [testng] [2024-12-19 00:45:46,963] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x48.tiff: [testng] [2024-12-19 00:45:52,310] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-12-19 00:45:53,544] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern5.tif: [testng] [2024-12-19 00:45:55,155] [pool-1-thread-9] Initializing /data/public/condensation/A5.pattern3.tif: [testng] [2024-12-19 00:45:56,763] [pool-1-thread-11] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-12-19 00:45:59,233] [pool-1-thread-1] Initializing /data/curtis/map/jumps-over: [testng] [2024-12-19 00:46:00,989] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z010.tif: [testng] [2024-12-19 00:46:02,888] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z025.tif: [testng] [2024-12-19 00:46:03,653] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0236.TIF: [testng] [2024-12-19 00:46:04,417] [pool-1-thread-5] Initializing /data/kevino/_BF_00003.tif: [testng] [2024-12-19 00:46:09,664] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z033.tif: [testng] [2024-12-19 00:46:10,532] [pool-1-thread-4] Initializing /data/jonathan/Cut-1_001.tif: [testng] [2024-12-19 00:46:12,099] [pool-1-thread-7] Initializing /data/kelsey/Live-Dead Assay 4000 nm pitch PU.TIF: [testng] [2024-12-19 00:46:16,146] [pool-1-thread-1] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2024-12-19 00:46:19,163] [pool-1-thread-10] Initializing /data/sub-resolution/Leica-1/Leica-1-subifds.tiff: [testng] [2024-12-19 00:46:20,485] [pool-1-thread-2] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-12-19 00:46:21,230] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z013.tif: [testng] [2024-12-19 00:46:21,881] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-12-19 00:46:22,428] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x48.tiff: [testng] [2024-12-19 00:46:22,962] [pool-1-thread-12] Initializing /data/josh/3Aa_C2_TP1.tiff: [testng] [2024-12-19 00:46:23,663] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-12-19 00:46:26,960] [pool-1-thread-6] Initializing /data/qa-4833/cjw_tiffs/23273992_Figure 6_NA_NA_22159.TIF: [testng] [2024-12-19 00:46:28,412] [pool-1-thread-8] Initializing /data/brian/retina/retina_C1_Z003.tif: [testng] [2024-12-19 00:46:29,802] [pool-1-thread-4] Initializing /data/julien/EmmanuelVignalchewingfraise.TIF: [testng] [2024-12-19 00:46:32,285] [pool-1-thread-7] Initializing /data/big-images/2kx2k.tif: [testng] [2024-12-19 00:46:38,007] 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[pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z022.tif: [testng] [2024-12-19 00:58:20,066] [pool-1-thread-4] Initializing /data/ascb/CYT-55_HowellGolgiRibbonOutlined_4800.tif: [testng] [2024-12-19 00:58:20,472] [pool-1-thread-7] Initializing /data/tom-kazimiers/test_exiftool2_resave2.tiff: [testng] [2024-12-19 00:58:21,001] [pool-1-thread-6] Initializing /data/lzw/DendriteForks.tif: [testng] [2024-12-19 00:58:21,388] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-02.tiff: [testng] [2024-12-19 00:58:24,340] [pool-1-thread-12] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-12-19 00:58:25,014] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-12-19 00:58:27,059] [pool-1-thread-1] Initializing /data/kevino/_BF_00002.tif: [testng] [2024-12-19 00:58:28,722] [pool-1-thread-9] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2024-12-19 00:58:29,461] [pool-1-thread-10] Initializing 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003_0_P23_0Red.tif: [testng] [2024-12-19 00:58:40,667] [pool-1-thread-7] Initializing /data/damian/15m.tiff: [testng] [2024-12-19 00:58:41,591] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z062.tif: [testng] [2024-12-19 00:58:43,216] [pool-1-thread-6] Initializing /data/carolyn/tumor_4.tif: [testng] [2024-12-19 00:58:44,352] [pool-1-thread-10] Initializing /data/ascb/bad/CYT-76_PasolliMouse1_4800.tif: [testng] [2024-12-19 00:58:46,684] [pool-1-thread-5] Initializing /data/ascb/CYT-43_HowellAcinarUnlabeled_4800.tif: [testng] [2024-12-19 00:58:49,997] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2024-12-19 00:58:50,772] [pool-1-thread-12] Initializing /data/damian/12m.tiff: [testng] [2024-12-19 00:58:51,904] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2024-12-19 00:58:53,019] [pool-1-thread-2] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-12-19 00:58:55,734] [pool-1-thread-11] Initializing /data/josiah/cell-Z28.C1.tiff: [testng] [2024-12-19 00:58:56,469] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z041.tif: [testng] [2024-12-19 00:58:57,015] [pool-1-thread-7] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-12-19 00:58:57,581] [pool-1-thread-6] Initializing /data/ascb/CYT-92_PasolliMouse1b_4800.tif: [testng] [2024-12-19 00:59:01,917] [pool-1-thread-4] Initializing /data/curtis/images24.tiff: [testng] [2024-12-19 00:59:03,203] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0243.TIF: [testng] [2024-12-19 00:59:03,975] [pool-1-thread-12] Initializing /data/josiah/cell-Z8.C1.tiff: [testng] [2024-12-19 00:59:07,144] [pool-1-thread-11] Initializing /data/ascb/CYT-93_PasolliMouse1c_4800.tif: [testng] [2024-12-19 00:59:12,291] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-12-19 00:59:13,103] [pool-1-thread-5] Initializing /data/samples/melissa/16-signed-lzw-differenced.tiff: [testng] [2024-12-19 00:59:17,031] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z012.tif: [testng] [2024-12-19 00:59:17,692] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] [2024-12-19 00:59:18,604] [pool-1-thread-12] Initializing /data/public/condensation/E4.pattern6.tif: [testng] [2024-12-19 00:59:19,411] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z014.tif: [testng] [2024-12-19 00:59:20,143] [pool-1-thread-9] Initializing /data/curtis/test2.tiff: [testng] [2024-12-19 00:59:20,892] [pool-1-thread-6] Initializing /data/stephane/001_z01.tif: [testng] [2024-12-19 00:59:21,469] [pool-1-thread-3] Initializing /data/julien/Chadisoukkarieh.TIF: [testng] [2024-12-19 00:59:23,326] [pool-1-thread-11] Initializing /data/jay/Cleared%2fStack.tif: [testng] [2024-12-19 00:59:23,931] [pool-1-thread-5] Initializing /data/public/condensation/A1.pattern2.tif: [testng] [2024-12-19 00:59:27,271] [pool-1-thread-4] Initializing /data/wayne/MyoblastCells-8bit.tiff: [testng] [2024-12-19 00:59:27,899] [pool-1-thread-10] Initializing /data/josiah/cell-Z21.C1.tiff: [testng] [2024-12-19 00:59:28,577] [pool-1-thread-12] Initializing /data/wayne/Rockies-rgb.tif: [testng] [2024-12-19 00:59:29,146] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0256.TIF: [testng] [2024-12-19 00:59:29,803] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z061.tif: [testng] [2024-12-19 00:59:30,290] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z033.tif: [testng] [2024-12-19 00:59:30,766] [pool-1-thread-3] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-12-19 00:59:40,970] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z011.tif: [testng] [2024-12-19 00:59:43,235] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z004.tif: [testng] [2024-12-19 00:59:45,500] [pool-1-thread-11] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-12-19 00:59:46,090] [pool-1-thread-5] Initializing /data/brian/PlantCell/PlantCell_C1_Z007.tif: [testng] [2024-12-19 00:59:50,354] [pool-1-thread-1] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs003.TIF: [testng] [2024-12-19 00:59:50,967] [pool-1-thread-9] Initializing /data/josiah/cell-Z17.C1.tiff: [testng] [2024-12-19 00:59:51,634] [pool-1-thread-6] Initializing /data/bene/3d-example-stack.tif: [testng] [2024-12-19 00:59:52,097] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z042.tif: [testng] [2024-12-19 00:59:52,504] [pool-1-thread-4] Initializing /data/josiah/cell-Z36.C0.tiff: [testng] [2024-12-19 00:59:52,979] [pool-1-thread-10] Initializing /data/tom-kazimiers/test_exiftool2.tiff: [testng] [2024-12-19 00:59:53,577] [pool-1-thread-7] Initializing /data/josiah/cell-Z24.C0.tiff: [testng] [2024-12-19 00:59:55,706] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z008.tif: [testng] [2024-12-19 00:59:56,208] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2024-12-19 01:00:00,118] [pool-1-thread-5] Initializing /data/sub-resolution/Leica-3/Leica-3-subifds.tiff: [testng] [2024-12-19 01:00:00,684] [pool-1-thread-11] Initializing /data/damian/36m.tiff: [testng] [2024-12-19 01:00:02,598] [pool-1-thread-10] Initializing /data/julien/Chadisoukkarieh6.TIF: [testng] [2024-12-19 01:00:03,361] [pool-1-thread-6] Initializing /data/public/condensation/C4.pattern4.tif: [testng] [2024-12-19 01:00:04,300] [pool-1-thread-7] Initializing /data/tamjid/10_para-stage 1.tiff: [testng] [2024-12-19 01:00:05,050] [pool-1-thread-8] Initializing /data/damian/33m.tiff: [testng] [2024-12-19 01:00:05,542] [pool-1-thread-12] Initializing /data/josiah/cell-Z29.C0.tiff: [testng] [2024-12-19 01:00:06,007] [pool-1-thread-4] Initializing /data/damian/damian.tif: [testng] [2024-12-19 01:00:06,498] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x64.tiff: [testng] [2024-12-19 01:00:06,981] [pool-1-thread-2] Initializing /data/tom-kazimiers/test_exiftool2_resave.tiff: [testng] [2024-12-19 01:00:07,504] [pool-1-thread-1] Initializing /data/josiah/cell-Z2.C0.tiff: [testng] [2024-12-19 01:00:11,809] [pool-1-thread-11] Initializing /data/public/libtiff/quad-jpeg.tif: [testng] [2024-12-19 01:00:14,329] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-12-19 01:00:14,965] [pool-1-thread-10] Initializing /data/tom-kazimiers/crop_two_chan.tiff: [testng] [2024-12-19 01:00:17,229] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z022.tif: [testng] [2024-12-19 01:00:18,311] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z050.tif: [testng] [2024-12-19 01:00:18,948] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x32.tiff: [testng] [2024-12-19 01:00:19,484] [pool-1-thread-12] Initializing /data/public/libtiff/caspian.tif: [testng] [2024-12-19 01:00:19,965] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2024-12-19 01:00:20,439] [pool-1-thread-1] Initializing /data/josiah/cell-Z9.C0.tiff: [testng] [2024-12-19 01:00:20,919] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z027.tif: [testng] [2024-12-19 01:00:21,401] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs008.TIF: [testng] [2024-12-19 01:00:26,327] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z053.tif: [testng] [2024-12-19 01:00:27,175] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-12-19 01:00:28,137] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0245.TIF: [testng] [2024-12-19 01:00:29,110] [pool-1-thread-8] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-12-19 01:00:29,971] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-12-19 01:00:30,689] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-12-19 01:00:31,201] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-12-19 01:00:31,745] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [2024-12-19 01:00:32,284] [pool-1-thread-1] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-12-19 01:00:32,763] [pool-1-thread-9] Initializing /data/ascb/CYT-91_PasolliMouse1a_4800.tif: [testng] [2024-12-19 01:00:33,250] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z015.tif: [testng] [2024-12-19 01:00:38,326] [pool-1-thread-11] Initializing /data/josiah/cell-Z13.C0.tiff: [testng] [2024-12-19 01:00:40,475] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-32x32.tiff: [testng] [2024-12-19 01:00:41,335] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-12-19 01:00:42,232] [pool-1-thread-2] Initializing /data/ascb/14346-myc-p125A.tif: [testng] [2024-12-19 01:00:42,971] [pool-1-thread-7] Initializing /data/andrew/wibble-tmp4.tiff: [testng] [2024-12-19 01:00:43,639] [pool-1-thread-4] Initializing /data/josiah/cell-Z15.C1.tiff: [testng] [2024-12-19 01:00:44,181] [pool-1-thread-3] Initializing /data/public/condensation/A10.pattern1.tif: [testng] [2024-12-19 01:00:44,730] [pool-1-thread-12] Initializing /data/kevino/_BF_00000.tif: [testng] [2024-12-19 01:00:46,743] [pool-1-thread-8] Initializing /data/big-images/4kx4k.tif: [testng] [2024-12-19 01:00:49,938] [pool-1-thread-6] Initializing /data/victoria/scan4_1hr_20X_.352g_n180p_2z_0.387644res_9int_C2_TP1.tiff: [testng] [2024-12-19 01:00:50,453] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z048.tif: [testng] [2024-12-19 01:00:51,288] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x48.tiff: [testng] [2024-12-19 01:00:52,199] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2024-12-19 01:00:53,150] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z031.tif: [testng] [2024-12-19 01:00:53,767] [pool-1-thread-4] Initializing /data/darwinjob/SESSION4_Image2.tif: [testng] [2024-12-19 01:00:54,238] [pool-1-thread-7] Initializing /data/david/100umbeads_stack.tif: [testng] [2024-12-19 01:00:54,760] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z010.tif: [testng] [2024-12-19 01:00:55,275] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP2.tiff: [testng] [2024-12-19 01:00:55,774] [pool-1-thread-2] Initializing /data/ascb/FND-10_PorterMitochondria_4800.tif: time="2024-12-19T01:00:55Z" level=error msg="error waiting for container: unexpected EOF" Build step 'Execute shell' marked build as failure Finished: FAILURE