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Started by upstream project "BIOFORMATS-test-repo" build number 302 originally caused by: Started by upstream project "Trigger" build number 324 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15732219619416325421.sh + '[' bdv = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_47858_merge_ci -v /uod/idr/repos/curated/bdv:/data -v /uod/idr-scratch/merge-ci/curated/bdv:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:55:50,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:55:50,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:55:50,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:55:50,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:55:50,692 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:55:50,692 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:55:50,692 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:55:50,693 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:55:50,693 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 04:55:50,694 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 04:55:50,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 376 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-12-29 04:55:50,701] [main] java.version = 17.0.2 [testng] 04:55:50,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:55:50,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:55:50,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-12-29_04-55-50.log] [testng] 04:55:50,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-12-29 04:55:50,744] [main] testng.directory = /data [testng] [2024-12-29 04:55:50,744] [main] testng.configDirectory = /config [testng] [2024-12-29 04:55:50,944] [main] testng.multiplier = 1.0 [testng] [2024-12-29 04:55:50,945] [main] testng.in-memory = false [testng] [2024-12-29 04:55:50,945] [main] testng.allow-missing = false [testng] [2024-12-29 04:55:50,945] [main] user.language = en [testng] [2024-12-29 04:55:50,945] [main] user.country = ${user.country} [testng] [2024-12-29 04:55:50,945] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-12-29 04:56:20,573] [main] ---------------------------------------- [testng] [2024-12-29 04:56:20,574] [main] Total files: 12 [testng] [2024-12-29 04:56:20,574] [main] Scan time: 29.628 s (2469 ms/file) [testng] [2024-12-29 04:56:20,574] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 5 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-12-29 05:09:16,481] [pool-1-thread-1] Initializing /data/public/idr0038/Lam-Cytok-MV-f0.h5: [testng] 05:09:16,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:09:16,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:16,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-12-29_05-09-16.log] [testng] 05:09:16,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2711d461 - End of configuration. [testng] [2024-12-29 05:10:12,991] [pool-1-thread-5] Initializing /data/public/idr0048/astroP65.h5: [testng] 05:10:12,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:10:12,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:10:12,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-12-29_05-10-12.log] [testng] 05:10:12,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45ea24f3 - End of configuration. [testng] [2024-12-29 05:14:51,894] [pool-1-thread-4] Initializing /data/public/samples/drosophila.h5: [testng] 05:14:51,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:14:51,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:14:51,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-12-29_05-14-51.log] [testng] 05:14:52,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f09eb07 - End of configuration. [testng] [2024-12-29 05:15:26,382] [pool-1-thread-3] Initializing /data/public/samples/HisYFP-SPIM.h5: [testng] 05:15:26,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:15:26,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:26,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-12-29_05-15-26.log] [testng] 05:15:26,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ef44d05 - End of configuration. [testng] [2024-12-29 05:15:37,961] [pool-1-thread-2] Initializing /data/public/idr0048/WB.h5: [testng] 05:15:37,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:15:37,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:37,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-12-29_05-15-37.log] [testng] 05:15:37,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@400e8461 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 265, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 minutes 14 seconds Finished: SUCCESS