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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins3445847356791911677.sh + '[' afi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5301_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:36:51,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:36:51,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:36:52,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:36:52,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:36:52,050 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:36:52,051 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:36:52,051 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:36:52,052 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:36:52,052 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 09:36:52,053 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 09:36:52,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 469 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:36:52,069] [main] java.version = 1.8.0_342 [testng] 09:36:52,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:36:52,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:36:52,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-36-52.log] [testng] 09:36:52,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:36:52,196] [main] testng.directory = /data [testng] [2024-04-19 09:36:52,197] [main] testng.configDirectory = /config [testng] [2024-04-19 09:36:52,218] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:36:52,219] [main] testng.in-memory = false [testng] [2024-04-19 09:36:52,219] [main] testng.allow-missing = false [testng] [2024-04-19 09:36:52,219] [main] user.language = en [testng] [2024-04-19 09:36:52,219] [main] user.country = ${user.country} [testng] [2024-04-19 09:36:52,219] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:36:53,474] [main] ---------------------------------------- [testng] [2024-04-19 09:36:53,474] [main] Total files: 16 [testng] [2024-04-19 09:36:53,474] [main] Scan time: 1.254 s (78 ms/file) [testng] [2024-04-19 09:36:53,474] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:37:05,588] [pool-1-thread-1] Initializing /data/samples/5400.afi: [testng] 09:37:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:37:05,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:05,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-37-05.log] [testng] 09:37:05,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d11691 - End of configuration. [testng] [2024-04-19 09:37:05,691] [pool-1-thread-12] Initializing /data/samples/5351.afi: [testng] 09:37:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:37:05,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:05,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-19_09-37-05.log] [testng] 09:37:05,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec50c69 - End of configuration. [testng] [2024-04-19 09:37:05,872] [pool-1-thread-11] Initializing /data/samples/5306.afi: [testng] 09:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:37:05,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:05,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-37-05.log] [testng] 09:37:05,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61cdaf67 - End of configuration. [testng] [2024-04-19 09:37:05,936] [pool-1-thread-10] Initializing /data/samples/5383.afi: [testng] 09:37:05,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:37:05,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:05,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-37-05.log] [testng] 09:37:05,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3730c1 - End of configuration. [testng] [2024-04-19 09:37:06,062] [pool-1-thread-9] Initializing /data/samples/5365.afi: [testng] 09:37:06,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:37:06,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,063 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-37-06.log] [testng] 09:37:06,063 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01fb27 - End of configuration. [testng] [2024-04-19 09:37:06,150] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] 09:37:06,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:37:06,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,152 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-37-06.log] [testng] 09:37:06,152 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration. [testng] [2024-04-19 09:37:06,407] [pool-1-thread-7] Initializing /data/samples/5446.afi: [testng] 09:37:06,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:37:06,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-37-06.log] [testng] 09:37:06,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37a80c41 - End of configuration. [testng] [2024-04-19 09:37:06,508] [pool-1-thread-6] Initializing /data/samples/5339.afi: [testng] 09:37:06,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:37:06,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-37-06.log] [testng] 09:37:06,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee86dd8 - End of configuration. [testng] [2024-04-19 09:37:06,599] [pool-1-thread-5] Initializing /data/samples/5387.afi: [testng] 09:37:06,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:37:06,599 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,600 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-37-06.log] [testng] 09:37:06,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b20e9ec - End of configuration. [testng] [2024-04-19 09:37:06,714] [pool-1-thread-4] Initializing /data/samples/5407.afi: [testng] 09:37:06,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:37:06,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-37-06.log] [testng] 09:37:06,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ecbe74d - End of configuration. [testng] [2024-04-19 09:37:06,921] [pool-1-thread-3] Initializing /data/samples/5347.afi: [testng] 09:37:06,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:37:06,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-37-06.log] [testng] 09:37:06,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5be9f71a - End of configuration. [testng] [2024-04-19 09:37:06,986] [pool-1-thread-2] Initializing /data/samples/5358.afi: [testng] 09:37:06,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:37:06,986 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:37:06,987 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-37-06.log] [testng] 09:37:06,987 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b93950 - End of configuration. [testng] [2024-04-19 09:37:54,742] [pool-1-thread-1] Initializing /data/samples/5414.afi: [testng] [2024-04-19 09:37:56,194] [pool-1-thread-8] Initializing /data/samples/5343.afi: [testng] [2024-04-19 09:37:56,833] [pool-1-thread-3] Initializing /data/samples/5371.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 59 seconds Finished: SUCCESS