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Started by upstream project "BIOFORMATS-test-repo" build number 38 originally caused by: Started by upstream project "Trigger" build number 44 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins609910917989899405.sh + '[' sis = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_5302_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 09:38:55,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:38:55,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:38:55,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:38:55,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:38:55,543 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:38:55,544 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:38:55,544 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:38:55,544 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:38:55,544 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 09:38:55,545 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 09:38:55,546 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 435 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-19 09:38:55,557] [main] java.version = 1.8.0_342 [testng] 09:38:55,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:38:55,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:55,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-19_09-38-55.log] [testng] 09:38:55,616 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-19 09:38:55,619] [main] testng.directory = /data [testng] [2024-04-19 09:38:55,619] [main] testng.configDirectory = /config [testng] [2024-04-19 09:38:55,635] [main] testng.multiplier = 1.0 [testng] [2024-04-19 09:38:55,635] [main] testng.in-memory = false [testng] [2024-04-19 09:38:55,635] [main] testng.allow-missing = false [testng] [2024-04-19 09:38:55,635] [main] user.language = en [testng] [2024-04-19 09:38:55,635] [main] user.country = ${user.country} [testng] [2024-04-19 09:38:55,635] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-19 09:38:56,686] [main] ---------------------------------------- [testng] [2024-04-19 09:38:56,686] [main] Total files: 13 [testng] [2024-04-19 09:38:56,686] [main] Scan time: 1.05 s (80 ms/file) [testng] [2024-04-19 09:38:56,686] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-19 09:38:58,956] [pool-1-thread-1] Initializing /data/dimitri/ELN-ARM_00049_38.tif: [testng] 09:38:58,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:38:58,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:58,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-19_09-38-58.log] [testng] 09:38:58,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39eb5649 - End of configuration. [testng] [2024-04-19 09:38:59,016] [pool-1-thread-11] Initializing /data/glen/CG 3.31 10K.tif: [testng] 09:38:59,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:38:59,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-19_09-38-59.log] [testng] 09:38:59,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b936efe - End of configuration. [testng] [2024-04-19 09:38:59,065] [pool-1-thread-10] Initializing /data/glen/L1468a-2_4_15000X.tif: [testng] 09:38:59,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:38:59,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-19_09-38-59.log] [testng] 09:38:59,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cf46fc3 - End of configuration. [testng] [2024-04-19 09:38:59,140] [pool-1-thread-9] Initializing /data/glen/L1500k P_3_7500X.tif: [testng] 09:38:59,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:38:59,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,141 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-19_09-38-59.log] [testng] 09:38:59,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77fd1b98 - End of configuration. [testng] [2024-04-19 09:38:59,202] [pool-1-thread-8] Initializing /data/glen/L1500k P_4_7500X.tif: [testng] 09:38:59,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:38:59,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-19_09-38-59.log] [testng] 09:38:59,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df0a560 - End of configuration. [testng] [2024-04-19 09:38:59,263] [pool-1-thread-7] Initializing /data/pki/Tv2.tif: [testng] 09:38:59,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:38:59,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-19_09-38-59.log] [testng] 09:38:59,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@320b18fd - End of configuration. [testng] [2024-04-19 09:38:59,315] [pool-1-thread-6] Initializing /data/strand/FS44-1-254.tif: [testng] 09:38:59,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:38:59,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-19_09-38-59.log] [testng] 09:38:59,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7066147c - End of configuration. [testng] [2024-04-19 09:38:59,365] [pool-1-thread-5] Initializing /data/glen/CG 3.31 20K.tif: [testng] 09:38:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:38:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,366 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-19_09-38-59.log] [testng] 09:38:59,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2c4c0 - End of configuration. [testng] [2024-04-19 09:38:59,452] [pool-1-thread-4] Initializing /data/glen/CG 3.31 15K.tif: [testng] 09:38:59,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:38:59,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-19_09-38-59.log] [testng] 09:38:59,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375f7b74 - End of configuration. [testng] [2024-04-19 09:38:59,510] [pool-1-thread-2] Initializing /data/strand/MIA.tif: [testng] 09:38:59,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:38:59,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-19_09-38-59.log] [testng] 09:38:59,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e6b140c - End of configuration. [testng] [2024-04-19 09:38:59,561] [pool-1-thread-3] Initializing /data/russell/Arbacia 2week ADL.tif: [testng] 09:38:59,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:38:59,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:38:59,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-19_09-38-59.log] [testng] 09:38:59,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74aeccb0 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS