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Started by upstream project "BIOFORMATS-test-repo" build number 362 originally caused by: Started by upstream project "Trigger" build number 388 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12134442235356345339.sh + '[' avi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_57719_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:45:16,845 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:45:16,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:45:16,846 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:16,847 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:16,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:45:16,847 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:45:16,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:45:16,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:16,848 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:16,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:45:16,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:45:16,849 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:45:17,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:45:17,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:45:17,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:45:17,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:45:17,031 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:45:17,031 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:45:17,031 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:45:17,031 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:45:17,031 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:45:17,032 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:45:17,032 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-02 01:45:17,041] [main] java.version = 17.0.2 [testng] 01:45:17,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:45:17,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:17,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-02_01-45-17.log] [testng] 01:45:17,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-02 01:45:17,087] [main] testng.directory = /data [testng] [2025-03-02 01:45:17,087] [main] testng.configDirectory = /config [testng] [2025-03-02 01:45:17,096] [main] testng.multiplier = 1.0 [testng] [2025-03-02 01:45:17,096] [main] testng.in-memory = false [testng] [2025-03-02 01:45:17,096] [main] testng.allow-missing = false [testng] [2025-03-02 01:45:17,096] [main] user.language = en [testng] [2025-03-02 01:45:17,097] [main] user.country = ${user.country} [testng] [2025-03-02 01:45:17,097] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-02 01:45:22,058] [main] ---------------------------------------- [testng] [2025-03-02 01:45:22,059] [main] Total files: 40 [testng] [2025-03-02 01:45:22,059] [main] Scan time: 4.961 s (124 ms/file) [testng] [2025-03-02 01:45:22,059] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-02 01:46:09,824] [pool-1-thread-1] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 01:46:09,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:46:09,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:09,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-02_01-46-09.log] [testng] 01:46:09,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7527bebd - End of configuration. [testng] [2025-03-02 01:46:10,030] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 01:46:10,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:46:10,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-02_01-46-10.log] [testng] 01:46:10,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a744bf0 - End of configuration. [testng] [2025-03-02 01:46:10,239] [pool-1-thread-11] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] 01:46:10,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:46:10,239 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-02_01-46-10.log] [testng] 01:46:10,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fb0e3c2 - End of configuration. [testng] [2025-03-02 01:46:10,429] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi: [testng] 01:46:10,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:46:10,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-02_01-46-10.log] [testng] 01:46:10,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38089e88 - End of configuration. [testng] [2025-03-02 01:46:10,692] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 01:46:10,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:46:10,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,693 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-02_01-46-10.log] [testng] 01:46:10,693 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49111dab - End of configuration. [testng] [2025-03-02 01:46:10,866] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 01:46:10,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:46:10,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-02_01-46-10.log] [testng] 01:46:10,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c27175 - End of configuration. [testng] [2025-03-02 01:46:11,051] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 01:46:11,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:46:11,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,052 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-02_01-46-11.log] [testng] 01:46:11,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc8ec57 - End of configuration. [testng] [2025-03-02 01:46:11,220] [pool-1-thread-6] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 01:46:11,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:46:11,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-02_01-46-11.log] [testng] 01:46:11,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57b4a75 - End of configuration. [testng] [2025-03-02 01:46:11,379] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 01:46:11,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:46:11,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-02_01-46-11.log] [testng] 01:46:11,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@215f166e - End of configuration. [testng] [2025-03-02 01:46:11,568] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 01:46:11,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:46:11,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,570 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-02_01-46-11.log] [testng] 01:46:11,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ef6a1ef - End of configuration. [testng] [2025-03-02 01:46:11,802] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 01:46:11,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:46:11,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-02_01-46-11.log] [testng] 01:46:11,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462c7c3a - End of configuration. [testng] [2025-03-02 01:46:12,014] [pool-1-thread-2] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 01:46:12,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:46:12,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:12,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-02_01-46-12.log] [testng] 01:46:12,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27cea7f3 - End of configuration. [testng] [2025-03-02 01:46:15,261] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2025-03-02 01:46:15,965] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] [2025-03-02 01:46:16,290] [pool-1-thread-3] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-03-02 01:46:16,573] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] [2025-03-02 01:46:16,880] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2025-03-02 01:46:18,280] [pool-1-thread-11] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-03-02 01:46:19,575] [pool-1-thread-12] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-03-02 01:46:19,875] [pool-1-thread-9] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2025-03-02 01:46:20,120] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2025-03-02 01:46:20,332] [pool-1-thread-5] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2025-03-02 01:46:20,541] [pool-1-thread-10] Initializing /data/kurt/40x_6um_2.avi: [testng] [2025-03-02 01:46:20,769] [pool-1-thread-4] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-03-02 01:46:23,162] [pool-1-thread-3] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-03-02 01:46:23,411] [pool-1-thread-1] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-03-02 01:46:23,959] [pool-1-thread-8] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2025-03-02 01:46:24,266] [pool-1-thread-9] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2025-03-02 01:46:24,610] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] [2025-03-02 01:46:24,909] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2025-03-02 01:46:25,193] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: [testng] [2025-03-02 01:46:25,434] [pool-1-thread-2] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-03-02 01:46:25,657] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2025-03-02 01:46:25,882] [pool-1-thread-6] Initializing /data/chris/APZ04_009.avi: [testng] [2025-03-02 01:46:27,042] [pool-1-thread-10] Initializing /data/ascb/TIRF.avi: [testng] [2025-03-02 01:46:28,595] [pool-1-thread-3] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-03-02 01:46:29,916] [pool-1-thread-7] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-03-02 01:46:30,228] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 24 seconds Finished: SUCCESS