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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins16291523520647887074.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58473_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:29:16,451 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:29:16,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:29:16,453 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:16,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:16,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:29:16,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:29:16,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:29:16,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:16,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:16,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:29:16,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:29:16,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:29:16,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:29:16,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:29:16,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:29:16,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:29:16,740 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:29:16,740 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:29:16,740 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:29:16,741 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:29:16,741 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:29:16,741 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:29:16,741 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:29:16,751] [main] java.version = 1.8.0_342 [testng] 00:29:16,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:29:16,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:16,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-29-16.log] [testng] 00:29:16,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:29:16,816] [main] testng.directory = /data [testng] [2025-03-07 00:29:16,817] [main] testng.configDirectory = /config [testng] [2025-03-07 00:29:16,830] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:29:16,830] [main] testng.in-memory = false [testng] [2025-03-07 00:29:16,830] [main] testng.allow-missing = false [testng] [2025-03-07 00:29:16,830] [main] user.language = en [testng] [2025-03-07 00:29:16,830] [main] user.country = ${user.country} [testng] [2025-03-07 00:29:16,830] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:29:17,448] [main] ---------------------------------------- [testng] [2025-03-07 00:29:17,449] [main] Total files: 21 [testng] [2025-03-07 00:29:17,449] [main] Scan time: 0.618 s (29 ms/file) [testng] [2025-03-07 00:29:17,449] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:29:38,970] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 00:29:38,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:29:38,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:38,971 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-29-38.log] [testng] 00:29:38,972 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d8511e1 - End of configuration. [testng] [2025-03-07 00:29:39,940] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:29:39,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:29:39,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:39,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-29-39.log] [testng] 00:29:39,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42ab2b79 - End of configuration. [testng] [2025-03-07 00:29:40,760] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:29:40,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:29:40,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:40,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-29-40.log] [testng] 00:29:40,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76930c7a - End of configuration. [testng] [2025-03-07 00:29:41,525] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:29:41,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:29:41,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:41,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-29-41.log] [testng] 00:29:41,527 |-INFO in ch.qos.logback.core.sift.SiftProcessor@178b8206 - End of configuration. [testng] [2025-03-07 00:29:42,180] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:29:42,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:29:42,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:42,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-29-42.log] [testng] 00:29:42,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e0b4c81 - End of configuration. [testng] [2025-03-07 00:29:42,842] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:29:42,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:29:42,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:42,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-29-42.log] [testng] 00:29:42,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3213e06b - End of configuration. [testng] [2025-03-07 00:29:43,513] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:29:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:29:43,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:43,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-29-43.log] [testng] 00:29:43,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d8294b9 - End of configuration. [testng] [2025-03-07 00:29:44,315] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:29:44,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:29:44,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:44,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-29-44.log] [testng] 00:29:44,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d81c61c - End of configuration. [testng] [2025-03-07 00:29:45,288] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:29:45,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:29:45,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:45,289 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-29-45.log] [testng] 00:29:45,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26563289 - End of configuration. [testng] [2025-03-07 00:29:46,618] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:29:46,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:29:46,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:46,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-29-46.log] [testng] 00:29:46,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15903fda - End of configuration. [testng] [2025-03-07 00:29:47,404] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:29:47,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:29:47,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:47,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-29-47.log] [testng] 00:29:47,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cee035e - End of configuration. [testng] [2025-03-07 00:29:48,011] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:29:48,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:29:48,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:48,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-29-48.log] [testng] 00:29:48,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46777794 - End of configuration. [testng] [2025-03-07 00:29:56,167] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim: [testng] [2025-03-07 00:29:56,835] [pool-1-thread-6] Initializing /data/venu/Kontrolle0002.lim: [testng] [2025-03-07 00:29:57,313] [pool-1-thread-3] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-03-07 00:29:57,764] [pool-1-thread-5] Initializing /data/venu/Kontrolle0004.lim: [testng] [2025-03-07 00:29:58,303] [pool-1-thread-8] Initializing /data/venu/Kontrolle0014.lim: [testng] [2025-03-07 00:29:59,025] [pool-1-thread-1] Initializing /data/venu/Kontrolle0011.lim: [testng] [2025-03-07 00:29:59,604] [pool-1-thread-12] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-03-07 00:30:00,224] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 52 seconds Finished: SUCCESS