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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15200451187746332604.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58474_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:29:56,241 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:29:56,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:29:56,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:56,244 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:29:56,244 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:29:56,245 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:29:56,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:29:56,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:56,245 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:29:56,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:29:56,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:29:56,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:29:56,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:29:56,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:29:56,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:29:56,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:29:56,518 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:29:56,518 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:29:56,519 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:29:56,519 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:29:56,519 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:29:56,520 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:29:56,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 275 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 00:29:56,530] [main] java.version = 1.8.0_342 [testng] 00:29:56,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:29:56,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:29:56,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_00-29-56.log] [testng] 00:29:56,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 00:29:56,583] [main] testng.directory = /data [testng] [2025-03-07 00:29:56,583] [main] testng.configDirectory = /config [testng] [2025-03-07 00:29:56,595] [main] testng.multiplier = 1.0 [testng] [2025-03-07 00:29:56,596] [main] testng.in-memory = false [testng] [2025-03-07 00:29:56,596] [main] testng.allow-missing = false [testng] [2025-03-07 00:29:56,596] [main] user.language = en [testng] [2025-03-07 00:29:56,596] [main] user.country = ${user.country} [testng] [2025-03-07 00:29:56,596] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 00:30:42,597] [main] ---------------------------------------- [testng] [2025-03-07 00:30:42,597] [main] Total files: 21 [testng] [2025-03-07 00:30:42,597] [main] Scan time: 46.001 s (2190 ms/file) [testng] [2025-03-07 00:30:42,597] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 00:32:04,423] [pool-1-thread-1] Initializing /data/stefan/001_q10.txt: [testng] 00:32:04,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:32:04,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:04,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_00-32-04.log] [testng] 00:32:04,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3068c459 - End of configuration. [testng] [2025-03-07 00:32:10,418] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 00:32:10,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:32:10,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:10,419 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_00-32-10.log] [testng] 00:32:10,419 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6409237 - End of configuration. [testng] [2025-03-07 00:32:18,449] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 00:32:18,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:32:18,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:18,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_00-32-18.log] [testng] 00:32:18,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43726102 - End of configuration. [testng] [2025-03-07 00:32:22,090] [pool-1-thread-10] Initializing /data/stefan/001_q15.txt: [testng] 00:32:22,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:32:22,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:22,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_00-32-22.log] [testng] 00:32:22,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e896bbb - End of configuration. [testng] [2025-03-07 00:32:26,424] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt: [testng] 00:32:26,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:32:26,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:26,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_00-32-26.log] [testng] 00:32:26,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f54c68 - End of configuration. [testng] [2025-03-07 00:32:29,544] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] 00:32:29,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:32:29,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:29,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_00-32-29.log] [testng] 00:32:29,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f3ae501 - End of configuration. [testng] [2025-03-07 00:32:37,074] [pool-1-thread-7] Initializing /data/stefan/001_q06.txt: [testng] 00:32:37,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:32:37,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:37,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_00-32-37.log] [testng] 00:32:37,075 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ae26427 - End of configuration. [testng] [2025-03-07 00:32:40,932] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] 00:32:40,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:32:40,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:40,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_00-32-40.log] [testng] 00:32:40,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e03c11 - End of configuration. [testng] [2025-03-07 00:32:44,465] [pool-1-thread-5] Initializing /data/stefan/001_q08.txt: [testng] 00:32:44,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:32:44,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:44,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_00-32-44.log] [testng] 00:32:44,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680499b5 - End of configuration. [testng] [2025-03-07 00:32:52,078] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt: [testng] 00:32:52,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:32:52,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:52,079 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_00-32-52.log] [testng] 00:32:52,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f86da0c - End of configuration. [testng] [2025-03-07 00:32:55,392] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] 00:32:55,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:32:55,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:55,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_00-32-55.log] [testng] 00:32:55,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@458a7717 - End of configuration. [testng] [2025-03-07 00:32:59,423] [pool-1-thread-2] Initializing /data/stefan/001_q14.txt: [testng] 00:32:59,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:32:59,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:59,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_00-32-59.log] [testng] 00:32:59,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cc8f2e9 - End of configuration. [testng] [2025-03-07 00:33:36,968] [pool-1-thread-4] Initializing /data/stefan/001_q17.txt: [testng] [2025-03-07 00:33:40,571] [pool-1-thread-6] Initializing /data/stefan/001_q18.txt: [testng] [2025-03-07 00:33:44,199] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] [2025-03-07 00:33:48,319] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] [2025-03-07 00:33:56,180] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt: [testng] [2025-03-07 00:34:02,471] [pool-1-thread-7] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 54 seconds Finished: SUCCESS