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Started by upstream project "BIOFORMATS-test-repo" build number 367
originally caused by:
 Started by upstream project "Trigger" build number 393
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7754972012565687787.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58584_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 08:35:25,317 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 08:35:25,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
   [testng] 08:35:25,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:35:25,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 08:35:25,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 08:35:25,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 08:35:25,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 08:35:25,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:35:25,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 08:35:25,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 08:35:25,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 08:35:25,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 08:35:25,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 08:35:25,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 08:35:25,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 08:35:25,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 08:35:25,563 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 08:35:25,564 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 08:35:25,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 08:35:25,564 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 08:35:25,564 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
   [testng] 08:35:25,565 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
   [testng] 08:35:25,565 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-07 08:35:25,574] [main] java.version = 1.8.0_342
   [testng] 08:35:25,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 08:35:25,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 08:35:25,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_08-35-25.log]
   [testng] 08:35:25,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
   [testng] [2025-03-07 08:35:25,623] [main] testng.directory = /data
   [testng] [2025-03-07 08:35:25,623] [main] testng.configDirectory = /config
   [testng] [2025-03-07 08:35:25,634] [main] testng.multiplier = 1.0
   [testng] [2025-03-07 08:35:25,634] [main] testng.in-memory = false
   [testng] [2025-03-07 08:35:25,635] [main] testng.allow-missing = false
   [testng] [2025-03-07 08:35:25,635] [main] user.language = en
   [testng] [2025-03-07 08:35:25,635] [main] user.country = ${user.country}
   [testng] [2025-03-07 08:35:25,635] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2025-03-07 08:39:52,524] [main] ----------------------------------------
   [testng] [2025-03-07 08:39:52,524] [main] Total files: 2169
   [testng] [2025-03-07 08:39:52,524] [main] Scan time: 266.889 s (123 ms/file)
   [testng] [2025-03-07 08:39:52,524] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-07 09:12:58,623] [pool-1-thread-1] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 09:12:58,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 09:12:58,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:12:58,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_09-12-58.log]
   [testng] 09:12:58,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65bfd0a6 - End of configuration.
   [testng] [2025-03-07 09:13:03,377] [pool-1-thread-12] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 09:13:03,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 09:13:03,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:13:03,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_09-13-03.log]
   [testng] 09:13:03,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33acfe42 - End of configuration.
   [testng] [2025-03-07 09:13:48,366] [pool-1-thread-11] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 09:13:48,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 09:13:48,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:13:48,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_09-13-48.log]
   [testng] 09:13:48,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@287e4ed8 - End of configuration.
   [testng] [2025-03-07 09:14:04,924] [pool-1-thread-10] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 09:14:04,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 09:14:04,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:14:04,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_09-14-04.log]
   [testng] 09:14:04,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56c666d4 - End of configuration.
   [testng] [2025-03-07 09:18:31,560] [pool-1-thread-9] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] 09:18:31,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 09:18:31,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:18:31,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_09-18-31.log]
   [testng] 09:18:31,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68e04bac - End of configuration.
   [testng] [2025-03-07 09:21:53,131] [pool-1-thread-8] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 09:21:53,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 09:21:53,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:21:53,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_09-21-53.log]
   [testng] 09:21:53,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30f4777a - End of configuration.
   [testng] [2025-03-07 09:21:55,791] [pool-1-thread-7] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] 09:21:55,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 09:21:55,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:21:55,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_09-21-55.log]
   [testng] 09:21:55,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29911d25 - End of configuration.
   [testng] [2025-03-07 09:22:10,046] [pool-1-thread-6] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 09:22:10,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 09:22:10,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:22:10,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_09-22-10.log]
   [testng] 09:22:10,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55aca6fe - End of configuration.
   [testng] [2025-03-07 09:27:26,839] [pool-1-thread-5] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 09:27:26,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 09:27:26,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:27:26,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_09-27-26.log]
   [testng] 09:27:26,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3577a03a - End of configuration.
   [testng] [2025-03-07 09:29:04,628] [pool-1-thread-4] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] 09:29:04,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 09:29:04,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:29:04,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_09-29-04.log]
   [testng] 09:29:04,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@373b90bb - End of configuration.
   [testng] [2025-03-07 09:33:42,284] [pool-1-thread-3] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 09:33:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 09:33:42,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:33:42,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_09-33-42.log]
   [testng] 09:33:42,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189345b3 - End of configuration.
   [testng] [2025-03-07 09:35:13,304] [pool-1-thread-2] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] 09:35:13,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 09:35:13,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:35:13,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_09-35-13.log]
   [testng] 09:35:13,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bed5038 - End of configuration.
   [testng] [2025-03-07 09:43:11,555] [pool-1-thread-8] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] [2025-03-07 09:46:13,491] [pool-1-thread-8] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] [2025-03-07 10:25:34,282] [pool-1-thread-1] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] [2025-03-07 10:36:08,027] [pool-1-thread-1] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 11:54:13,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 11:54:13,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 11:54:13,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_11-54-13.log]
   [testng] 11:54:13,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7655b7c2 - End of configuration.
   [testng] 12:21:51,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 12:21:51,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 12:21:51,332 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_12-21-51.log]
   [testng] 12:21:51,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f9996b - End of configuration.
   [testng] [2025-03-07 13:14:34,708] [pool-1-thread-7] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] 19:51:18,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 19:51:18,505 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 19:51:18,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_19-51-18.log]
   [testng] 19:51:18,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f2b6d7 - End of configuration.
Build was aborted
Calling Pipeline was cancelled
Finished: ABORTED