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Started by upstream project "BIOFORMATS-test-repo" build number 367 originally caused by: Started by upstream project "Trigger" build number 393 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7188372556160831586.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58585_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:37:35,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:37:35,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 08:37:35,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:37:35,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:37:35,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:37:35,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:37:35,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:37:35,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:37:35,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:37:35,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:37:35,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:37:35,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:37:35,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:37:35,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:37:35,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:37:35,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:37:35,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:37:35,270 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:37:35,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:37:35,271 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:37:35,271 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 08:37:35,271 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 08:37:35,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 245 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-07 08:37:35,281] [main] java.version = 1.8.0_342 [testng] 08:37:35,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:37:35,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:35,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_08-37-35.log] [testng] 08:37:35,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-07 08:37:35,329] [main] testng.directory = /data [testng] [2025-03-07 08:37:35,329] [main] testng.configDirectory = /config [testng] [2025-03-07 08:37:35,340] [main] testng.multiplier = 1.0 [testng] [2025-03-07 08:37:35,341] [main] testng.in-memory = false [testng] [2025-03-07 08:37:35,341] [main] testng.allow-missing = false [testng] [2025-03-07 08:37:35,341] [main] user.language = en [testng] [2025-03-07 08:37:35,341] [main] user.country = ${user.country} [testng] [2025-03-07 08:37:35,341] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-07 08:37:35,997] [main] ---------------------------------------- [testng] [2025-03-07 08:37:35,997] [main] Total files: 21 [testng] [2025-03-07 08:37:35,997] [main] Scan time: 0.656 s (31 ms/file) [testng] [2025-03-07 08:37:35,997] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-07 08:37:41,697] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 08:37:41,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:37:41,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:41,699 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_08-37-41.log] [testng] 08:37:41,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23608afa - End of configuration. [testng] [2025-03-07 08:37:41,859] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 08:37:41,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:37:41,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:41,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_08-37-41.log] [testng] 08:37:41,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63f2cf76 - End of configuration. [testng] [2025-03-07 08:37:42,004] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 08:37:42,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:37:42,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_08-37-42.log] [testng] 08:37:42,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6427462f - End of configuration. [testng] [2025-03-07 08:37:42,143] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 08:37:42,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:37:42,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_08-37-42.log] [testng] 08:37:42,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44b4ab3e - End of configuration. [testng] [2025-03-07 08:37:42,251] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 08:37:42,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:37:42,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_08-37-42.log] [testng] 08:37:42,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11a04798 - End of configuration. [testng] [2025-03-07 08:37:42,332] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 08:37:42,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:37:42,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,333 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_08-37-42.log] [testng] 08:37:42,333 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14b6487e - End of configuration. [testng] [2025-03-07 08:37:42,398] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 08:37:42,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:37:42,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_08-37-42.log] [testng] 08:37:42,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@917d951 - End of configuration. [testng] [2025-03-07 08:37:42,471] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 08:37:42,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:37:42,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:42,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_08-37-42.log] [testng] 08:37:42,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e19475 - End of configuration. [testng] [2025-03-07 08:37:44,878] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 08:37:44,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:37:44,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:44,879 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_08-37-44.log] [testng] 08:37:44,880 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ddb878 - End of configuration. [testng] [2025-03-07 08:37:44,919] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 08:37:44,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:37:44,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:44,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_08-37-44.log] [testng] 08:37:44,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5706c0e - End of configuration. [testng] [2025-03-07 08:37:44,956] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 08:37:44,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:37:44,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:44,957 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_08-37-44.log] [testng] 08:37:44,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190959c4 - End of configuration. [testng] [2025-03-07 08:37:45,018] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 08:37:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:37:45,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:37:45,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_08-37-45.log] [testng] 08:37:45,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52ef61c1 - End of configuration. [testng] [2025-03-07 08:37:47,270] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2025-03-07 08:37:47,431] [pool-1-thread-11] Initializing /data/samples/PhugAnimation3.png: [testng] [2025-03-07 08:37:47,468] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] [2025-03-07 08:37:47,516] [pool-1-thread-7] Initializing /data/samples/StarV838.png: [testng] [2025-03-07 08:37:47,553] [pool-1-thread-8] Initializing /data/samples/spinfox.png: [testng] [2025-03-07 08:37:47,609] [pool-1-thread-3] Initializing /data/samples/william_wong01.png: [testng] [2025-03-07 08:37:47,651] [pool-1-thread-2] Initializing /data/samples/william_wong05.png: [testng] [2025-03-07 08:37:47,688] [pool-1-thread-5] Initializing /data/colin/test.sfstdge.png: [testng] [2025-03-07 08:37:47,722] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_one.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS