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Started by upstream project "BIOFORMATS-test-repo" build number 369 originally caused by: Started by upstream project "Trigger" build number 395 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8321235857260230938.sh + '[' incell = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58890_merge_ci -v /uod/idr/repos/curated/incell:/data -v /uod/idr-scratch/merge-ci/curated/incell:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:34:58,193 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:34:58,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:34:58,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:58,195 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:34:58,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:34:58,196 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:34:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:34:58,196 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:58,197 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:34:58,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:34:58,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:34:58,198 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:34:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:34:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:34:58,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:34:58,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:34:58,393 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:34:58,393 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:34:58,393 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:34:58,393 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:34:58,394 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:34:58,394 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:34:58,394 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 01:34:58,404] [main] java.version = 17.0.2 [testng] 01:34:58,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:34:58,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:58,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_01-34-58.log] [testng] 01:34:58,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-10 01:34:58,454] [main] testng.directory = /data [testng] [2025-03-10 01:34:58,454] [main] testng.configDirectory = /config [testng] [2025-03-10 01:34:58,463] [main] testng.multiplier = 1.0 [testng] [2025-03-10 01:34:58,464] [main] testng.in-memory = false [testng] [2025-03-10 01:34:58,464] [main] testng.allow-missing = false [testng] [2025-03-10 01:34:58,464] [main] user.language = fr [testng] [2025-03-10 01:34:58,464] [main] user.country = FR [testng] [2025-03-10 01:34:58,464] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-10 02:55:45,379] [main] ---------------------------------------- [testng] [2025-03-10 02:55:45,379] [main] Total files: 8203 [testng] [2025-03-10 02:55:45,379] [main] Scan time: 4846.915 s (590 ms/file) [testng] [2025-03-10 02:55:45,379] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 03:33:03,051] [pool-1-thread-1] Initializing /data/michael/Single plane no flatfield corr/2007.10.17.17.04.55.xdce: [testng] 03:33:03,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:33:03,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:03,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_03-33-03.log] [testng] 03:33:03,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66cfdf83 - End of configuration. [testng] [2025-03-10 03:33:03,945] [pool-1-thread-12] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_Tif/ER2009_97_239_TIFF/PC3_ER2009.97.239.xdce: [testng] 03:33:03,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:33:03,945 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:03,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_03-33-03.log] [testng] 03:33:03,946 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec328bd - End of configuration. [testng] [2025-03-10 03:33:05,177] [pool-1-thread-11] Initializing /data/public/INMAC384-DAPI-CM-eGFP_59223_1/INMAC384-DAPI-CM-eGFP_59223_1.xdce: [testng] 03:33:05,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:33:05,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:05,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_03-33-05.log] [testng] 03:33:05,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71f73771 - End of configuration. [testng] [2025-03-10 03:33:06,947] [pool-1-thread-10] Initializing /data/michael/firstStack/2007.07.05.17.33.35.xdce: [testng] 03:33:06,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:33:06,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:06,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_03-33-06.log] [testng] 03:33:06,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e665756 - End of configuration. [testng] [2025-03-10 03:33:08,006] [pool-1-thread-9] Initializing /data/public/zenodo-14769820/Dataset_Fail/Dataset3_RedoAcq_1.xdce: [testng] 03:33:08,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:33:08,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:08,007 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_03-33-08.log] [testng] 03:33:08,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3570aa4c - End of configuration. [testng] [2025-03-10 03:33:09,292] [pool-1-thread-8] Initializing /data/damir/20x Z1 16fields Gr Rd DAPI Cy5_140610-3_fix_2.xdce: [testng] 03:33:09,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:33:09,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:09,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_03-33-09.log] [testng] 03:33:09,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e2b75d5 - End of configuration. [testng] [2025-03-10 03:33:14,726] [pool-1-thread-7] Initializing /data/public/zenodo-14769820/Dataset_ok/AnnexinV_HO_EthD1_BSF023221_1.xdce: [testng] 03:33:14,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:33:14,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:14,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_03-33-14.log] [testng] 03:33:14,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a81a79c - End of configuration. [testng] [2025-03-10 03:33:18,810] [pool-1-thread-6] Initializing /data/frans/incell_25juni2009/ANALYZE files/plaat HR 38/txt en XML output file/HCT116_HR2009.97.038/HCT116_HR2009.97.038.xdce: [testng] 03:33:18,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:33:18,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:18,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_03-33-18.log] [testng] 03:33:18,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@175b5f10 - End of configuration. [testng] [2025-03-10 03:33:20,179] [pool-1-thread-5] Initializing /data/brian/H2Blivecell20x/H2Blivecell20x.xdce: [testng] 03:33:20,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:33:20,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:20,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_03-33-20.log] [testng] 03:33:20,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e37188d - End of configuration. [testng] [2025-03-10 03:33:24,732] [pool-1-thread-4] Initializing /data/public/zenodo-14777242/Training_Demo_1.xdce: [testng] 03:33:24,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:33:24,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:24,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_03-33-24.log] [testng] 03:33:24,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6aab0 - End of configuration. [testng] [2025-03-10 03:33:26,029] [pool-1-thread-3] Initializing /data/qa-4122/KJH YFPPML 2000_A-101061_1.xdce: [testng] 03:33:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:33:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:26,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_03-33-26.log] [testng] 03:33:26,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ef92aa4 - End of configuration. [testng] [2025-03-10 03:33:27,256] [pool-1-thread-2] Initializing /data/public/INMAC384-DAPI-CM-eGFP_59224_1/INMAC384-DAPI-CM-eGFP_59224_1.xdce: [testng] 03:33:27,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:33:27,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:33:27,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_03-33-27.log] [testng] 03:33:27,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c6a65ef - End of configuration. [testng] [2025-03-10 03:35:14,705] [pool-1-thread-3] Initializing /data/frans/im dataset/PC3_ER2009.97.180_IM.xdce: [testng] [2025-03-10 03:43:46,943] [pool-1-thread-10] Initializing /data/samples/images_number_mismatch/test.xdce: [testng] [2025-03-10 03:44:47,843] [pool-1-thread-1] Initializing /data/samples/variable-field-count/test.xdce: [testng] [2025-03-10 03:45:16,269] [pool-1-thread-10] Initializing /data/brian/livecell/H2b10xtrial.xdce: [testng] [2025-03-10 03:46:17,159] [pool-1-thread-1] Initializing /data/michael/2007.08.02.16.43.24/2007.08.02.16.43.24.xdce: [testng] [2025-03-10 03:48:25,972] [pool-1-thread-8] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_Tif/ER2009_97_238_TIFF/PC3_ER2009.97.238.xdce: [testng] [2025-03-10 03:49:34,135] [pool-1-thread-4] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_Tif/ER2009_97_240_TIFF/PC3_ER2009.97.240(ok).xdce: [testng] [2025-03-10 04:17:11,694] [pool-1-thread-9] Initializing /data/frans/incell_25juni2009/ANALYZE files/plaat HR 38/excel output file/HCT116_HR2009.97.038/HCT116_HR2009.97.038.xdce: [testng] [2025-03-10 04:19:11,259] [pool-1-thread-3] Initializing /data/brian/Proper Dark Images/2007.11.12.13.37.27.xdce: [testng] [2025-03-10 04:21:28,828] [pool-1-thread-3] Initializing /data/karsten/gabriele_-1_2/~gabriele_-1_2.xdce: [testng] [2025-03-10 04:25:30,197] [pool-1-thread-1] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_IM/2009_97_240_IM/2009_97_240_IM.xdce: [testng] [2025-03-10 04:28:39,931] [pool-1-thread-3] Initializing /data/karsten/gabriele_-1_2/gabriele_-1_2.xdce: [testng] [2025-03-10 04:34:53,263] [pool-1-thread-3] Initializing /data/michael/Z Sections with flatfield corr/2007.10.17.17.13.59.xdce: [testng] 04:49:19,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:49:19,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:49:19,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_04-49-19.log] [testng] 04:49:19,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b60c4f - End of configuration. [testng] [2025-03-10 04:52:10,419] [pool-1-thread-6] Initializing /data/brian/2Hour10x/H2b2Hour10x5fields.xdce: [testng] 05:01:45,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:01:45,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:45,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_05-01-45.log] [testng] 05:01:45,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a3b5a90 - End of configuration. [testng] 05:03:46,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:03:46,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:03:46,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_05-03-46.log] [testng] 05:03:46,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6784b272 - End of configuration. [testng] [2025-03-10 05:05:11,560] [pool-1-thread-12] Initializing /data/frans/incell_25juni2009/ANALYZE files/plaat HR37/excel output file/HCT116_HR2009.97.037/HCT116_HR2009.97.037.xdce: [testng] [2025-03-10 05:08:46,619] [pool-1-thread-10] Initializing /data/public/idr0017/2011-11-17_X-Man_LOPAC_X01_LP_S01_1/2011-11-17 X-Man LOPAC_X03_LP_S01_1.xdce: [testng] [2025-03-10 05:15:18,025] [pool-1-thread-1] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_IM/2009_97_238_IM/2009_97_238_IM.xdce: [testng] 05:28:49,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:28:49,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:28:49,232 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_05-28-49.log] [testng] 05:28:49,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264e9816 - End of configuration. [testng] 05:29:31,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:29:31,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:29:31,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_05-29-31.log] [testng] 05:29:31,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@db33ae6 - End of configuration. [testng] [2025-03-10 05:32:47,335] [pool-1-thread-8] Initializing /data/frans/incell_25juni2009/Experiment_with_3_plates_as_IM/2009_97_239_IM/2009_97_239_IM.xdce: [testng] 05:40:30,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:40:30,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:30,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_05-40-30.log] [testng] 05:40:30,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@414153ed - End of configuration. [testng] 05:59:44,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:59:44,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:59:44,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_05-59-44.log] [testng] 05:59:44,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14a26a6a - End of configuration. [testng] 06:11:42,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:11:42,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:11:42,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_06-11-42.log] [testng] 06:11:42,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292d94ef - End of configuration. [testng] 06:12:55,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:12:55,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:12:55,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_06-12-55.log] [testng] 06:12:55,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62ec3458 - End of configuration. [testng] 06:45:55,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:45:55,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:45:55,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_06-45-55.log] [testng] 06:45:55,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6414fc43 - End of configuration. [testng] 06:46:19,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:46:19,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:46:19,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_06-46-19.log] [testng] 06:46:19,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b878880 - End of configuration. Build was aborted Calling Pipeline was cancelled Calling Pipeline was cancelled Finished: ABORTED