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Started by upstream project "BIOFORMATS-test-repo" build number 369 originally caused by: Started by upstream project "Trigger" build number 395 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13755911164013563706.sh + '[' cellsens = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58891_merge_ci -v /uod/idr/repos/curated/cellsens:/data -v /uod/idr-scratch/merge-ci/curated/cellsens:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.scijava.org:443 [maven.scijava.org/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.scijava.org:443 [maven.scijava.org/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.scijava.org:443 [maven.scijava.org/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.imagej.net:443 [maven.imagej.net/144.92.48.196] failed: Read timed out [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): Connect to maven.scijava.org:443 [maven.scijava.org/144.92.48.196] failed: Read timed out [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:10:48,399 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:10:48,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 02:10:48,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:48,401 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:10:48,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:10:48,402 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:10:48,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:10:48,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:48,403 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:10:48,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:10:48,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:10:48,404 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:10:48,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:10:48,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:10:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:10:48,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:10:48,588 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:10:48,588 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:10:48,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:10:48,589 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:10:48,589 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 02:10:48,590 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 02:10:48,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 02:10:48,598] [main] java.version = 17.0.2 [testng] 02:10:48,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:10:48,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:10:48,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_02-10-48.log] [testng] 02:10:48,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-10 02:10:48,645] [main] testng.directory = /data [testng] [2025-03-10 02:10:48,645] [main] testng.configDirectory = /config [testng] [2025-03-10 02:10:48,654] [main] testng.multiplier = 1.0 [testng] [2025-03-10 02:10:48,655] [main] testng.in-memory = false [testng] [2025-03-10 02:10:48,655] [main] testng.allow-missing = false [testng] [2025-03-10 02:10:48,655] [main] user.language = fr [testng] [2025-03-10 02:10:48,655] [main] user.country = FR [testng] [2025-03-10 02:10:48,655] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-10 02:14:53,821] [main] ---------------------------------------- [testng] [2025-03-10 02:14:53,822] [main] Total files: 134 [testng] [2025-03-10 02:14:53,822] [main] Scan time: 245.166 s (1829 ms/file) [testng] [2025-03-10 02:14:53,822] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 72 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 02:17:56,952] [pool-1-thread-1] Initializing /data/robert/Lung_Mite.vsi: [testng] 02:17:56,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:56,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:56,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_02-17-56.log] [testng] 02:17:56,954 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31e45d24 - End of configuration. [testng] [2025-03-10 02:17:58,349] [pool-1-thread-12] Initializing /data/qa-18870/Image_T30.vsi: [testng] 02:17:58,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:58,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:58,350 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_02-17-58.log] [testng] 02:17:58,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250eedaf - End of configuration. [testng] [2025-03-10 02:17:59,660] [pool-1-thread-11] Initializing /data/samples/Measurement & ROI/Oxyuranus_microlepidotus.tif: [testng] 02:17:59,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:59,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:59,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_02-17-59.log] [testng] 02:17:59,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@547b68f3 - End of configuration. [testng] [2025-03-10 02:18:02,789] [pool-1-thread-10] Initializing /data/samples/Deconvolution/chroma liver 40x 8 planes.vsi: [testng] 02:18:02,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:18:02,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:02,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_02-18-02.log] [testng] 02:18:02,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1aa972db - End of configuration. [testng] [2025-03-10 02:18:04,099] [pool-1-thread-9] Initializing /data/samples/Image SHOW/Layer&Channels.tif: [testng] 02:18:04,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:18:04,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:04,100 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_02-18-04.log] [testng] 02:18:04,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6591f8fa - End of configuration. [testng] [2025-03-10 02:18:07,344] [pool-1-thread-8] Initializing /data/samples/Channels/svens cells - green.tif: [testng] 02:18:07,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:18:07,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:07,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_02-18-07.log] [testng] 02:18:07,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69c92923 - End of configuration. [testng] [2025-03-10 02:18:10,673] [pool-1-thread-7] Initializing /data/olivier/26-10-2014/Image_27_2.vsi: [testng] 02:18:10,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:18:10,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:10,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_02-18-10.log] [testng] 02:18:10,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11d415db - End of configuration. [testng] [2025-03-10 02:18:12,412] [pool-1-thread-6] Initializing /data/samples/Deconvolution/_islets_40X_2_/islets_40X_2.vsi: [testng] 02:18:12,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:18:12,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:12,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_02-18-12.log] [testng] 02:18:12,413 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68913396 - End of configuration. [testng] [2025-03-10 02:18:13,774] [pool-1-thread-5] Initializing /data/public/evident/Image_V4.1_FL_2D.vsi: [testng] 02:18:13,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:18:13,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:13,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_02-18-13.log] [testng] 02:18:13,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@648554ae - End of configuration. [testng] [2025-03-10 02:18:15,254] [pool-1-thread-4] Initializing /data/qa-29751/VSI-import-example-file.vsi: [testng] 02:18:15,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:18:15,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:15,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_02-18-15.log] [testng] 02:18:15,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a266a8 - End of configuration. [testng] [2025-03-10 02:18:16,634] [pool-1-thread-3] Initializing /data/melissa/artificial-vsi/Image_V4.1_BF.vsi: [testng] 02:18:16,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:16,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:16,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_02-18-16.log] [testng] 02:18:16,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@741afe21 - End of configuration. [testng] [2025-03-10 02:18:18,309] [pool-1-thread-2] Initializing /data/samples/Deconvolution/Gut section raw.vsi: [testng] 02:18:18,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:18,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:18,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_02-18-18.log] [testng] 02:18:18,310 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25ebd047 - End of configuration. [testng] [2025-03-10 02:18:27,844] [pool-1-thread-1] Initializing /data/samples/Image SHOW/HER2_FISH Assay.tif: [testng] [2025-03-10 02:18:32,704] [pool-1-thread-10] Initializing /data/alex/pN1_new.vsi: [testng] [2025-03-10 02:18:34,345] [pool-1-thread-2] Initializing /data/melissa/SW10082402-02_21 - 1 - GOLD copy.vsi: [testng] [2025-03-10 02:18:36,127] [pool-1-thread-6] Initializing /data/gh-3822/image.jp2: [testng] [2025-03-10 02:18:42,357] [pool-1-thread-11] Initializing /data/samples/Deconvolution/Skin 2.tif: [testng] [2025-03-10 02:18:45,727] [pool-1-thread-9] Initializing /data/samples/Fluorescence Unmixing/HeLa_original.tif: [testng] [2025-03-10 02:18:49,979] [pool-1-thread-8] Initializing /data/olivier/14-09-2012/Image_07.vsi: [testng] [2025-03-10 02:19:04,531] [pool-1-thread-1] Initializing /data/samples/Shading Correction/Micrometer Background.tif: [testng] [2025-03-10 02:19:12,925] [pool-1-thread-11] Initializing /data/samples/Channels/svens cells - blue.tif: [testng] [2025-03-10 02:19:16,812] [pool-1-thread-6] Initializing /data/samples/Fluorescence Unmixing/HeLa_GFP_only.tif: [testng] [2025-03-10 02:19:20,833] [pool-1-thread-9] Initializing /data/samples/Fluorescence Unmixing/HeLa_unmixed.tif: [testng] [2025-03-10 02:19:37,231] [pool-1-thread-1] Initializing /data/samples/Measurement & ROI/Cell Multichannel-M&R.tif: [testng] [2025-03-10 02:19:44,919] [pool-1-thread-11] Initializing /data/anthony/11R1398A1.vsi: [testng] [2025-03-10 02:19:47,123] [pool-1-thread-6] Initializing /data/samples/Count & Measure/slide IHC.tif: [testng] [2025-03-10 02:19:51,763] [pool-1-thread-9] Initializing /data/samples/Measurement & ROI/Brown snake.tif: [testng] [2025-03-10 02:20:03,743] [pool-1-thread-1] Initializing /data/samples/Process/HER2_FISH Assay.tif: [testng] [2025-03-10 02:20:17,745] [pool-1-thread-6] Initializing /data/samples/Channels/svens cells - red.tif: [testng] [2025-03-10 02:20:21,393] [pool-1-thread-9] Initializing /data/samples/Count & Measure/Cell Multichannel-z-stack.vsi: [testng] [2025-03-10 02:20:32,958] [pool-1-thread-9] Initializing /data/qa-11039/Image_01.vsi: [testng] [2025-03-10 02:20:34,533] [pool-1-thread-1] Initializing /data/samples/Count & Measure/color dots.tif: [testng] [2025-03-10 02:20:46,812] [pool-1-thread-6] Initializing /data/brian/Image_28.vsi: [testng] [2025-03-10 02:21:01,459] [pool-1-thread-1] Initializing /data/anda/Image_01_V76 K2 11_lung.thumbnail.jpg: [testng] [2025-03-10 02:21:10,379] [pool-1-thread-1] Initializing /data/samples/Process/Epithelial Cells3.tif: [testng] [2025-03-10 02:21:20,276] [pool-1-thread-10] Initializing /data/david/Image_normal_skin with hair/Image_normal_skin with hair.vsi: [testng] [2025-03-10 02:21:29,581] [pool-1-thread-1] Initializing /data/olivier/7262 wt col.vsi: [testng] [2025-03-10 02:21:39,301] [pool-1-thread-2] Initializing /data/olivier/small-tiles/esgTS-+;Sox21a[6]-+_30D25_09.vsi: [testng] [2025-03-10 02:22:18,397] [pool-1-thread-4] Initializing /data/samples/Measurement & ROI/Snake.tif: [testng] [2025-03-10 02:22:48,446] [pool-1-thread-4] Initializing /data/olivier/26-10-2014/Image_06.vsi: [testng] [2025-03-10 02:25:42,904] [pool-1-thread-1] Initializing /data/samples/Measurement & ROI/Bandy Snake.tif: [testng] [2025-03-10 02:25:51,536] [pool-1-thread-7] Initializing /data/olivier/26-10-2014/Image_27.vsi: [testng] [2025-03-10 02:25:55,133] [pool-1-thread-10] Initializing /data/public/evident/Image_V4.1_FL_3D.vsi: [testng] [2025-03-10 02:26:07,956] [pool-1-thread-1] Initializing /data/samples/Channels/Composite.vsi: [testng] [2025-03-10 02:26:18,454] [pool-1-thread-1] Initializing /data/gh-3822/image.vsi: [testng] [2025-03-10 02:26:59,090] [pool-1-thread-3] Initializing /data/brian/BZ cfos1-2_05.vsi: [testng] [2025-03-10 02:27:41,107] [pool-1-thread-1] Initializing /data/samples/Fluorescence/Plant FL 100x 29 Z CI Decon2.vsi: [testng] [2025-03-10 02:27:45,400] [pool-1-thread-6] Initializing /data/brian/SW10082402-02_21.vsi: [testng] [2025-03-10 02:27:55,760] [pool-1-thread-1] Initializing /data/gh-3819/H30-18-endo-sost-40x.vsi: [testng] [2025-03-10 02:28:52,948] [pool-1-thread-1] Initializing /data/samples/Count & Measure/Cell Multichannel-z-stack corr..vsi: [testng] [2025-03-10 02:29:02,624] [pool-1-thread-12] Initializing /data/samples/Deconvolution/Silver birch raw.vsi: [testng] [2025-03-10 02:29:05,239] [pool-1-thread-1] Initializing /data/alex/test.vsi: [testng] [2025-03-10 02:29:15,687] [pool-1-thread-12] Initializing /data/samples/Measurement & ROI/Intensity t series.vsi: [testng] [2025-03-10 02:29:22,300] [pool-1-thread-1] Initializing /data/anda/Image_01_V76 K2 11_lung.vsi: [testng] [2025-03-10 02:29:31,725] [pool-1-thread-12] Initializing /data/johannes/PSF_green_1.vsi: [testng] [2025-03-10 02:29:44,248] [pool-1-thread-3] Initializing /data/olivier/Image_06.vsi: [testng] [2025-03-10 02:29:48,089] [pool-1-thread-8] Initializing /data/qa-11394/f1 lateral 25hpf yen4 20X timelapse.vsi: [testng] [2025-03-10 02:29:51,801] [pool-1-thread-12] Initializing /data/samples/Channels/svens cells - DIC.tif: [testng] [2025-03-10 02:29:58,923] [pool-1-thread-4] Initializing /data/anda/Image_01_V76 K2 11_lung.overview.jpg: [testng] [2025-03-10 02:30:03,244] [pool-1-thread-9] Initializing /data/melissa/SW10082402-02_21 - cy2 - cy5 copy.vsi: [testng] [2025-03-10 02:30:08,153] [pool-1-thread-8] Initializing /data/david/smithd_20111115_1.vsi: [testng] [2025-03-10 02:30:19,126] [pool-1-thread-12] Initializing /data/samples/Fluorescence Unmixing/HeLa_YFP_only.tif: [testng] [2025-03-10 02:30:25,089] [pool-1-thread-5] Initializing /data/gh-3859/Image_Test2.vsi: [testng] [2025-03-10 02:30:26,851] [pool-1-thread-4] Initializing /data/michelle/FC(26)-19 Gadd45b 1hr_20121011_01.vsi: [testng] [2025-03-10 02:30:46,835] [pool-1-thread-12] Initializing /data/samples/Fluorescence/Dako_CISH.vsi: [testng] [2025-03-10 02:31:02,896] [pool-1-thread-12] Initializing /data/olivier/Stress47_02.vsi: [testng] [2025-03-10 02:32:21,851] [pool-1-thread-3] Initializing /data/samples/Count & Measure/color squares.tif: [testng] [2025-03-10 02:32:27,515] [pool-1-thread-6] Initializing /data/olivier/14-09-2012/Image_01.vsi: [testng] [2025-03-10 02:32:47,181] [pool-1-thread-1] Initializing /data/public/evident/Image_V4.1_BF.vsi: [testng] [2025-03-10 02:32:54,131] [pool-1-thread-3] Initializing /data/samples/Shading Correction/Micrometer Original.tif: [testng] [2025-03-10 02:33:21,851] [pool-1-thread-3] Initializing /data/samples/Fluorescence/drehung.avi: [testng] [2025-03-10 02:33:28,333] [pool-1-thread-3] Initializing /data/samples/Colocalisation/Daisy_Coloc.vsi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3816, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 63 minutes 21 seconds Finished: SUCCESS