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Started by upstream project "BIOFORMATS-test-repo" build number 369 originally caused by: Started by upstream project "Trigger" build number 395 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins1584280346538749232.sh + '[' veeco = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_58909_merge_ci -v /uod/idr/repos/curated/veeco:/data -v /uod/idr-scratch/merge-ci/curated/veeco:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) compile-tests: [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Resolving artifacts [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-mdbtools:5.3.4-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml [resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503) [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:46:54,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:46:54,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 03:46:54,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:54,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:54,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:46:54,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:46:54,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:46:54,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:54,636 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:54,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:46:54,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:46:54,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:46:54,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:46:54,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:46:54,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:46:54,819 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:46:54,824 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:46:54,824 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:46:54,824 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:46:54,825 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:46:54,825 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 03:46:54,825 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 03:46:54,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 03:46:54,834] [main] java.version = 17.0.2 [testng] 03:46:54,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:46:54,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:46:54,876 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_03-46-54.log] [testng] 03:46:54,877 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-10 03:46:54,879] [main] testng.directory = /data [testng] [2025-03-10 03:46:54,880] [main] testng.configDirectory = /config [testng] [2025-03-10 03:46:54,888] [main] testng.multiplier = 1.0 [testng] [2025-03-10 03:46:54,889] [main] testng.in-memory = false [testng] [2025-03-10 03:46:54,889] [main] testng.allow-missing = false [testng] [2025-03-10 03:46:54,889] [main] user.language = fr [testng] [2025-03-10 03:46:54,889] [main] user.country = FR [testng] [2025-03-10 03:46:54,889] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-10 03:46:55,622] [main] ---------------------------------------- [testng] [2025-03-10 03:46:55,622] [main] Total files: 6 [testng] [2025-03-10 03:46:55,622] [main] Scan time: 0.733 s (122 ms/file) [testng] [2025-03-10 03:46:55,622] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 6 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 03:47:08,207] [pool-1-thread-1] Initializing /data/milena/11230001.HDF: [testng] 03:47:08,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:47:08,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:08,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_03-47-08.log] [testng] 03:47:08,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fdba4a4 - End of configuration. [testng] [2025-03-10 03:47:10,179] [pool-1-thread-6] Initializing /data/milena/extra-samples/11230000.HDF: [testng] 03:47:10,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:47:10,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:10,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_03-47-10.log] [testng] 03:47:10,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f201ebe - End of configuration. [testng] [2025-03-10 03:47:12,091] [pool-1-thread-5] Initializing /data/milena/extra-samples/11230001.HDF: [testng] 03:47:12,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:47:12,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:12,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_03-47-12.log] [testng] 03:47:12,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41ecb8c0 - End of configuration. [testng] [2025-03-10 03:47:14,118] [pool-1-thread-4] Initializing /data/milena/11230002.HDF: [testng] 03:47:14,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:47:14,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:14,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_03-47-14.log] [testng] 03:47:14,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5d4d7f - End of configuration. [testng] [2025-03-10 03:47:16,427] [pool-1-thread-3] Initializing /data/milena/11230000.HDF: [testng] 03:47:16,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:47:16,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:16,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_03-47-16.log] [testng] 03:47:16,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65caba54 - End of configuration. [testng] [2025-03-10 03:47:18,604] [pool-1-thread-2] Initializing /data/milena/extra-samples/HDFsoftware-view.png: [testng] 03:47:18,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:47:18,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:47:18,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_03-47-18.log] [testng] 03:47:18,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ce90713 - End of configuration. BUILD SUCCESSFUL Total time: 49 seconds Finished: SUCCESS