Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 369
originally caused by:
 Started by upstream project "Trigger" build number 395
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins4799091683881795177.sh
+ '[' imagestream = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58910_merge_ci -v /uod/idr/repos/curated/imagestream:/data -v /uod/idr-scratch/merge-ci/curated/imagestream:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Resolving artifacts
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)

compile-tests:
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml failed to transfer from https://maven.imagej.net/content/groups/public during a previous attempt. This failure was cached in the local repository and resolution will not be reattempted until the update interval of imagej.public has elapsed or updates are forced. Original error: Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Resolving artifacts
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-mdbtools/5.3.4-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/metakit/5.8.9-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:metakit:5.8.9-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
[resolver:resolve] Downloading https://maven.imagej.net/content/groups/public/org/openmicroscopy/ome-poi/5.3.10-SNAPSHOT/maven-metadata.xml
[resolver:resolve] Could not transfer metadata org.openmicroscopy:ome-poi:5.3.10-SNAPSHOT/maven-metadata.xml from/to imagej.public (https://maven.imagej.net/content/groups/public): status code: 503, reason phrase: Service Unavailable (503)
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 03:53:37,077 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
   [testng] 03:53:37,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
   [testng] 03:53:37,078 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:53:37,079 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 03:53:37,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 03:53:37,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 03:53:37,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 03:53:37,080 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:53:37,081 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 03:53:37,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 03:53:37,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 03:53:37,082 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 03:53:37,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 03:53:37,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 03:53:37,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 03:53:37,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 03:53:37,267 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 03:53:37,267 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 03:53:37,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 03:53:37,267 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 03:53:37,267 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
   [testng] 03:53:37,268 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
   [testng] 03:53:37,268 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2025-03-10 03:53:37,277] [main] java.version = 17.0.2
   [testng] 03:53:37,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 03:53:37,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:37,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_03-53-37.log]
   [testng] 03:53:37,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
   [testng] [2025-03-10 03:53:37,325] [main] testng.directory = /data
   [testng] [2025-03-10 03:53:37,325] [main] testng.configDirectory = /config
   [testng] [2025-03-10 03:53:37,333] [main] testng.multiplier = 1.0
   [testng] [2025-03-10 03:53:37,334] [main] testng.in-memory = false
   [testng] [2025-03-10 03:53:37,334] [main] testng.allow-missing = false
   [testng] [2025-03-10 03:53:37,334] [main] user.language = fr
   [testng] [2025-03-10 03:53:37,334] [main] user.country = FR
   [testng] [2025-03-10 03:53:37,334] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2025-03-10 03:53:37,696] [main] ----------------------------------------
   [testng] [2025-03-10 03:53:37,696] [main] Total files: 1
   [testng] [2025-03-10 03:53:37,696] [main] Scan time: 0.362 s (362 ms/file)
   [testng] [2025-03-10 03:53:37,696] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test /data/minh/export_to_cif_for_later_tiff.cif
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2025-03-10 03:53:40,343] [pool-1-thread-1] Initializing /data/minh/export_to_cif_for_later_tiff.cif: 
   [testng] 03:53:40,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 03:53:40,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:53:40,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_03-53-40.log]
   [testng] 03:53:40,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12938c - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 53, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 6 minutes 25 seconds
Finished: SUCCESS