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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8202830357299678605.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59093_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 15:19:27,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 15:19:27,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 15:19:27,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:19:27,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:19:27,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:19:27,242 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:19:27,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:19:27,242 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:19:27,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:19:27,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:19:27,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:19:27,243 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:19:27,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:19:27,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:19:27,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:19:27,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:19:27,497 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:19:27,498 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:19:27,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:19:27,498 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:19:27,498 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 15:19:27,499 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 15:19:27,499 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 15:19:27,509] [main] java.version = 1.8.0_342 [testng] 15:19:27,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:19:27,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:27,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_15-19-27.log] [testng] 15:19:27,557 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 15:19:27,559] [main] testng.directory = /data [testng] [2025-03-10 15:19:27,559] [main] testng.configDirectory = /config [testng] [2025-03-10 15:19:27,571] [main] testng.multiplier = 1.0 [testng] [2025-03-10 15:19:27,571] [main] testng.in-memory = false [testng] [2025-03-10 15:19:27,571] [main] testng.allow-missing = false [testng] [2025-03-10 15:19:27,571] [main] user.language = fr [testng] [2025-03-10 15:19:27,571] [main] user.country = FR [testng] [2025-03-10 15:19:27,571] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 15:19:29,369] [main] ---------------------------------------- [testng] [2025-03-10 15:19:29,369] [main] Total files: 18 [testng] [2025-03-10 15:19:29,369] [main] Scan time: 1.798 s (99 ms/file) [testng] [2025-03-10 15:19:29,369] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 15:19:41,481] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 15:19:41,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:19:41,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:41,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_15-19-41.log] [testng] 15:19:41,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8f4f93 - End of configuration. [testng] [2025-03-10 15:19:42,141] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 15:19:42,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:19:42,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:42,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_15-19-42.log] [testng] 15:19:42,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36983228 - End of configuration. [testng] [2025-03-10 15:19:42,963] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 15:19:42,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:19:42,964 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:42,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_15-19-42.log] [testng] 15:19:42,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3063aef4 - End of configuration. [testng] [2025-03-10 15:19:43,541] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 15:19:43,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:19:43,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:43,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_15-19-43.log] [testng] 15:19:43,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d1c711 - End of configuration. [testng] [2025-03-10 15:19:44,017] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd: [testng] 15:19:44,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:19:44,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:44,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_15-19-44.log] [testng] 15:19:44,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5466f3e2 - End of configuration. [testng] [2025-03-10 15:19:44,690] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd: [testng] 15:19:44,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:19:44,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:44,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_15-19-44.log] [testng] 15:19:44,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e296bc - End of configuration. [testng] [2025-03-10 15:19:45,279] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 15:19:45,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:19:45,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:45,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_15-19-45.log] [testng] 15:19:45,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1585cf6f - End of configuration. [testng] [2025-03-10 15:19:45,773] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd: [testng] 15:19:45,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:19:45,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:45,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_15-19-45.log] [testng] 15:19:45,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5367d4f2 - End of configuration. [testng] [2025-03-10 15:19:46,222] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd: [testng] 15:19:46,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:19:46,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:46,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_15-19-46.log] [testng] 15:19:46,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1589809c - End of configuration. [testng] [2025-03-10 15:19:46,641] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd: [testng] 15:19:46,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:19:46,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:46,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_15-19-46.log] [testng] 15:19:46,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea61a97 - End of configuration. [testng] [2025-03-10 15:19:47,213] [pool-1-thread-3] Initializing /data/ascb/423.psd: [testng] 15:19:47,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:19:47,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:47,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_15-19-47.log] [testng] 15:19:47,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2796d2d0 - End of configuration. [testng] [2025-03-10 15:19:47,751] [pool-1-thread-2] Initializing /data/misc/smilie.psd: [testng] 15:19:47,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:19:47,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:19:47,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_15-19-47.log] [testng] 15:19:47,754 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507af7f8 - End of configuration. [testng] [2025-03-10 15:19:55,682] [pool-1-thread-4] Initializing /data/cris/house.tif: [testng] [2025-03-10 15:19:57,653] [pool-1-thread-9] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-10 15:19:58,280] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2025-03-10 15:19:58,995] [pool-1-thread-2] Initializing /data/ascb/607x.psd: [testng] [2025-03-10 15:19:59,669] [pool-1-thread-12] Initializing /data/misc/venus_composite.psd: [testng] [2025-03-10 15:20:00,432] [pool-1-thread-6] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 50 seconds Finished: SUCCESS