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Started by upstream project "BIOFORMATS-test-repo" build number 371 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins18170514825431252829.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_59094_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 15:20:18,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 15:20:18,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 15:20:18,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:20:18,046 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 15:20:18,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 15:20:18,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 15:20:18,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 15:20:18,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:20:18,047 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 15:20:18,047 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 15:20:18,047 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 15:20:18,048 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 15:20:18,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 15:20:18,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 15:20:18,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 15:20:18,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 15:20:18,301 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 15:20:18,301 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 15:20:18,301 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 15:20:18,302 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 15:20:18,302 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 15:20:18,302 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 15:20:18,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-10 15:20:18,312] [main] java.version = 1.8.0_342 [testng] 15:20:18,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 15:20:18,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:18,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-10_15-20-18.log] [testng] 15:20:18,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-10 15:20:18,363] [main] testng.directory = /data [testng] [2025-03-10 15:20:18,364] [main] testng.configDirectory = /config [testng] [2025-03-10 15:20:18,375] [main] testng.multiplier = 1.0 [testng] [2025-03-10 15:20:18,376] [main] testng.in-memory = false [testng] [2025-03-10 15:20:18,376] [main] testng.allow-missing = false [testng] [2025-03-10 15:20:18,376] [main] user.language = fr [testng] [2025-03-10 15:20:18,376] [main] user.country = FR [testng] [2025-03-10 15:20:18,376] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-10 15:20:26,360] [main] ---------------------------------------- [testng] [2025-03-10 15:20:26,360] [main] Total files: 32 [testng] [2025-03-10 15:20:26,360] [main] Scan time: 7.984 s (249 ms/file) [testng] [2025-03-10 15:20:26,360] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-10 15:21:10,221] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 15:21:10,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 15:21:10,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:10,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-10_15-21-10.log] [testng] 15:21:10,222 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec9ab3f - End of configuration. [testng] [2025-03-10 15:21:11,258] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] 15:21:11,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:21:11,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:11,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-10_15-21-11.log] [testng] 15:21:11,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eb6dedc - End of configuration. [testng] [2025-03-10 15:21:12,220] [pool-1-thread-11] Initializing /data/qa-29459/bad.1sc: [testng] 15:21:12,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:21:12,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:12,221 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-10_15-21-12.log] [testng] 15:21:12,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77635eb3 - End of configuration. [testng] [2025-03-10 15:21:13,049] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] 15:21:13,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 15:21:13,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:13,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-10_15-21-13.log] [testng] 15:21:13,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67743042 - End of configuration. [testng] [2025-03-10 15:21:15,820] [pool-1-thread-9] Initializing /data/geert/good example1.1sc.jpg: [testng] 15:21:15,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 15:21:15,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:15,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-10_15-21-15.log] [testng] 15:21:15,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@154aae02 - End of configuration. [testng] [2025-03-10 15:21:16,010] [pool-1-thread-8] Initializing /data/qa-29469/good.1sc: [testng] 15:21:16,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 15:21:16,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:16,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-10_15-21-16.log] [testng] 15:21:16,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bbcde1a - End of configuration. [testng] [2025-03-10 15:21:16,672] [pool-1-thread-7] Initializing /data/geert/bad example1.1sc: [testng] 15:21:16,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:21:16,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:16,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-10_15-21-16.log] [testng] 15:21:16,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1510763b - End of configuration. [testng] [2025-03-10 15:21:17,313] [pool-1-thread-6] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 15:21:17,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 15:21:17,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:17,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-10_15-21-17.log] [testng] 15:21:17,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@179bfdfe - End of configuration. [testng] [2025-03-10 15:21:17,948] [pool-1-thread-5] Initializing /data/qa-29459/bad.jpg: [testng] 15:21:17,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 15:21:17,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:17,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-10_15-21-17.log] [testng] 15:21:17,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c8d9e20 - End of configuration. [testng] [2025-03-10 15:21:18,137] [pool-1-thread-4] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 15:21:18,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:21:18,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:18,138 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-10_15-21-18.log] [testng] 15:21:18,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673b1103 - End of configuration. [testng] [2025-03-10 15:21:20,511] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 15:21:20,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:21:20,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:20,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-10_15-21-20.log] [testng] 15:21:20,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@536ff662 - End of configuration. [testng] [2025-03-10 15:21:23,743] [pool-1-thread-2] Initializing /data/david/Opened in imageJ.tiff: [testng] 15:21:23,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:21:23,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:21:23,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-10_15-21-23.log] [testng] 15:21:23,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@def46be - End of configuration. [testng] [2025-03-10 15:21:35,312] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-03-10 15:21:36,324] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2025-03-10 15:21:36,682] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-03-10 15:21:37,703] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-03-10 15:21:40,696] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc: [testng] [2025-03-10 15:21:41,548] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc: [testng] [2025-03-10 15:21:42,370] [pool-1-thread-1] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-03-10 15:21:43,196] [pool-1-thread-9] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2025-03-10 15:21:51,096] [pool-1-thread-7] Initializing /data/qa-29469/bad2.1sc: [testng] [2025-03-10 15:21:52,037] [pool-1-thread-12] Initializing /data/geert/bad example1.jpg: [testng] [2025-03-10 15:21:52,405] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2025-03-10 15:21:53,370] [pool-1-thread-1] Initializing /data/keith/test2.1sc: [testng] [2025-03-10 15:21:54,220] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc: [testng] [2025-03-10 15:21:55,013] [pool-1-thread-3] Initializing /data/adrian/test_img.1sc: [testng] [2025-03-10 15:21:55,947] [pool-1-thread-11] Initializing /data/qa-29469/bad3.1sc: [testng] [2025-03-10 15:21:56,886] [pool-1-thread-2] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-03-10 15:21:57,729] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2025-03-10 15:22:01,111] [pool-1-thread-5] Initializing /data/keith/test.1sc: [testng] [2025-03-10 15:22:02,116] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] [2025-03-10 15:22:08,395] [pool-1-thread-7] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 14 seconds Finished: SUCCESS