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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins12645597856525270035.sh + '[' avi = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60148_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:01:50,724 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:01:50,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 05:01:50,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:50,726 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:50,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:01:50,727 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:01:50,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:01:50,727 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:50,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:50,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:01:50,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:01:50,729 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:01:50,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:01:50,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:01:50,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:01:50,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:01:50,922 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:01:50,922 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:01:50,922 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:01:50,923 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:01:50,923 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 05:01:50,924 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 05:01:50,924 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 05:01:50,933] [main] java.version = 17.0.2 [testng] 05:01:50,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:01:50,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:50,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_05-01-50.log] [testng] 05:01:50,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 05:01:50,980] [main] testng.directory = /data [testng] [2025-03-16 05:01:50,980] [main] testng.configDirectory = /config [testng] [2025-03-16 05:01:50,989] [main] testng.multiplier = 1.0 [testng] [2025-03-16 05:01:50,990] [main] testng.in-memory = false [testng] [2025-03-16 05:01:50,990] [main] testng.allow-missing = false [testng] [2025-03-16 05:01:50,990] [main] user.language = en [testng] [2025-03-16 05:01:50,990] [main] user.country = ${user.country} [testng] [2025-03-16 05:01:50,990] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 05:02:05,930] [main] ---------------------------------------- [testng] [2025-03-16 05:02:05,930] [main] Total files: 40 [testng] [2025-03-16 05:02:05,930] [main] Scan time: 14.94 s (373 ms/file) [testng] [2025-03-16 05:02:05,930] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 05:06:38,511] [pool-1-thread-1] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 05:06:38,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:06:38,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:38,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_05-06-38.log] [testng] 05:06:38,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a985d05 - End of configuration. [testng] [2025-03-16 05:06:39,378] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] 05:06:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:06:39,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:39,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_05-06-39.log] [testng] 05:06:39,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d11593 - End of configuration. [testng] [2025-03-16 05:06:40,765] [pool-1-thread-11] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] 05:06:40,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:06:40,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:40,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_05-06-40.log] [testng] 05:06:40,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565eb738 - End of configuration. [testng] [2025-03-16 05:06:42,021] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi: [testng] 05:06:42,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:06:42,021 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:42,022 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_05-06-42.log] [testng] 05:06:42,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48cf576e - End of configuration. [testng] [2025-03-16 05:06:43,273] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 05:06:43,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:06:43,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:43,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_05-06-43.log] [testng] 05:06:43,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10ee009f - End of configuration. [testng] [2025-03-16 05:06:44,817] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 05:06:44,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:06:44,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:44,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_05-06-44.log] [testng] 05:06:44,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b2011dd - End of configuration. [testng] [2025-03-16 05:06:46,471] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 05:06:46,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:06:46,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:46,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_05-06-46.log] [testng] 05:06:46,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@386fd62d - End of configuration. [testng] [2025-03-16 05:06:48,131] [pool-1-thread-6] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] 05:06:48,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:06:48,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:48,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_05-06-48.log] [testng] 05:06:48,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54800439 - End of configuration. [testng] [2025-03-16 05:06:49,718] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 05:06:49,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:06:49,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:49,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_05-06-49.log] [testng] 05:06:49,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12d220c8 - End of configuration. [testng] [2025-03-16 05:06:51,574] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI: [testng] 05:06:51,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:06:51,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:51,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_05-06-51.log] [testng] 05:06:51,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@632427d1 - End of configuration. [testng] [2025-03-16 05:06:53,381] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 05:06:53,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:06:53,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:53,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_05-06-53.log] [testng] 05:06:53,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dee6701 - End of configuration. [testng] [2025-03-16 05:06:55,108] [pool-1-thread-2] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 05:06:55,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:06:55,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:06:55,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_05-06-55.log] [testng] 05:06:55,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49111dab - End of configuration. [testng] [2025-03-16 05:07:13,839] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2025-03-16 05:07:15,478] [pool-1-thread-9] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-03-16 05:07:17,137] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: [testng] [2025-03-16 05:07:18,059] [pool-1-thread-3] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2025-03-16 05:07:19,272] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-03-16 05:07:21,558] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] [2025-03-16 05:07:23,407] [pool-1-thread-11] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2025-03-16 05:07:25,605] [pool-1-thread-8] Initializing /data/kurt/40x_6um_2.avi: [testng] [2025-03-16 05:07:27,417] [pool-1-thread-5] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [2025-03-16 05:07:28,820] [pool-1-thread-7] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-03-16 05:07:30,427] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2025-03-16 05:07:31,914] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2025-03-16 05:07:49,461] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-03-16 05:07:51,159] [pool-1-thread-3] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2025-03-16 05:07:52,713] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2025-03-16 05:07:54,596] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-03-16 05:07:56,538] [pool-1-thread-5] Initializing /data/chris/APZ04_009.avi: [testng] [2025-03-16 05:08:11,095] [pool-1-thread-2] Initializing /data/ascb/TIRF.avi: [testng] [2025-03-16 05:08:14,016] [pool-1-thread-11] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-03-16 05:08:15,851] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2025-03-16 05:08:17,534] [pool-1-thread-6] Initializing /data/william/worm.avi: [testng] [2025-03-16 05:08:19,212] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2025-03-16 05:08:20,976] [pool-1-thread-7] Initializing /data/kurt/40x_6um.avi: [testng] [2025-03-16 05:08:24,370] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-03-16 05:08:33,476] [pool-1-thread-1] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2025-03-16 05:08:35,194] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 58 seconds Finished: SUCCESS